Avir017666.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000987:52417-55476[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 7.8 6.2e+02 0.6 0.0 26 45 203 222 199 225 0.89 2 9 0.13 11 6.3 0.3 21 48 226 253 218 257 0.84 3 9 0.0081 0.64 10.2 0.1 21 44 254 277 250 282 0.91 4 9 0.58 46 4.2 0.2 22 45 283 306 278 310 0.87 5 9 0.15 12 6.1 0.2 21 48 310 337 306 341 0.84 6 9 0.48 38 4.5 0.0 21 45 338 362 334 370 0.87 7 9 1.7 1.4e+02 2.7 0.3 21 44 366 389 360 393 0.71 8 9 0.067 5.3 7.2 0.1 20 44 396 420 386 425 0.90 9 9 0.031 2.5 8.3 0.2 21 44 425 448 421 454 0.88
Sequence Information
- Coding Sequence
- ATGGATGGTTTCAAAGATACATCAAATTCATTAATGAATAATAAAATTGAAAATCCTAAAGAATTGTTATCTAATATTAAAACCGAAGAAATTGAAACTGAAGAATGTAAACTCGAATTCGAGAACTTGCATCAAATTGACTTTTATATGACGAAAAGGGAAAGTTCTGTGGAAAAAGTTTCTCCAACTAAAAGCAAAGAAAATATAAAAACTGAAAATCTTCTTTCAAATGAGGGTATTCAAGAAAAAAAAAGTGATACCGGAATTAAGACAGAAATTATACAGCGTACATTTGATTTTCCTGTTTGTACAAACACTATTCATGATTTTGATGGAAATCGACAAACAGTGCAAAATACCAAAATGTATTCTAGGAAGAAATGTTTTTTATCTGTGGCAAAAAAATGGCATCCTCACTGTGGGAAATCCTATGGAACATGTTCCTTTTGTGGACAATTTTTTTATGATAAATTTCTATTTTTAAACCATTTTTATATTTATCACTTTTTAGTTAATTCTATTATAAAGAATAATTCTGCTACAAAAGAATCTGAGAACTTGAGAAGGAATAATTTTGCTACAAAACACATTGGGCAAATATCTTTCAAATGCGAAATTTGTTCAAAATGTTTCACAAAATCCAGTTATTTAAAAAAGCATATTAAAACTCACACTGGTGAAAAACCGTACAGATGTGAGATTTGTTCAAAATGTTTCACACGACAAGGTGATTTAAAACGACATATTAGAATTCACAGCGACGAAAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCAGGGAATCCGATACTTTAAAAAGGCACTATCGAGGTCACACTGGTGAAAAATCTTACAGATGTGTAATTTGTTCAAAATGTTTCACACAATCCAGTTATTTAAAAAAGCATATTAAAACTCACACAGGTGAAAAACCGTACCGATGTGAGATTTGTTCAAAATGTTTCACACGACAAGGTGATTTAAAACGACATATTAGAATTCACACCGACGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCGGCGAATCCGATAGTTTAAAAAAGCATTTTCGTAGTCACACTGGTGAAAAACCTTACAGATGTGAGATTTGTTCAAAATATTTTACACGACAAAGTACCTTAAAAGAACATATCAGAATTCACACTGGCGAGAAATCTGAGAAACGTTTTAAATGTAACATGTGTTCAAAATGTTTTAGAGGATCCAATAATTTAAAAACGCATATTAGAAAACACACTGGAGAGAAACCTTTTATATGTAAAATTTGTTCACAGTGTTTCACACAAAAAGGTAATTTAAAACAGCATATTATTAGAGCTCACCCTGAAGAAAAGTCATTGAAGTGTGAATTTGTTTAA
- Protein Sequence
- MDGFKDTSNSLMNNKIENPKELLSNIKTEEIETEECKLEFENLHQIDFYMTKRESSVEKVSPTKSKENIKTENLLSNEGIQEKKSDTGIKTEIIQRTFDFPVCTNTIHDFDGNRQTVQNTKMYSRKKCFLSVAKKWHPHCGKSYGTCSFCGQFFYDKFLFLNHFYIYHFLVNSIIKNNSATKESENLRRNNFATKHIGQISFKCEICSKCFTKSSYLKKHIKTHTGEKPYRCEICSKCFTRQGDLKRHIRIHSDEKPFKCEICSKCFRESDTLKRHYRGHTGEKSYRCVICSKCFTQSSYLKKHIKTHTGEKPYRCEICSKCFTRQGDLKRHIRIHTDEKPFKCEICSKCFGESDSLKKHFRSHTGEKPYRCEICSKYFTRQSTLKEHIRIHTGEKSEKRFKCNMCSKCFRGSNNLKTHIRKHTGEKPFICKICSQCFTQKGNLKQHIIRAHPEEKSLKCEFV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056944;
- 90% Identity
- iTF_00056944;
- 80% Identity
- iTF_00056944;