Avir016432.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000873:276452-277738[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.14 11 6.2 0.1 21 44 22 45 14 49 0.86 2 4 0.12 9.7 6.4 0.0 21 45 50 74 45 78 0.91 3 4 0.081 6.4 7.0 0.1 21 43 78 100 74 105 0.88 4 4 0.081 6.4 7.0 0.0 21 45 106 130 101 134 0.89
Sequence Information
- Coding Sequence
- ATGTTTGTTCAACACCTTTCAGACAAAAAAAACCATTTAAAGACTCATCAAAGAATTCACACAGGTGAAAGACCCTTTAAATGTACTATTTGTTCAAAACTGTTCAGAGCAAAAAGTCATTTAAAGAATCATCAACGAATCCACACTGGTGAAAAACCTTTTAGATGCAATGTTTGTTCAAAACTCTTCACATACTTATCTAATTTAAAAAAACATCTAAGAACTCACACTGGCGAAAAACCGTTTAAGTGTAATATTTGTTCAAAAATTTTCAGAGAAAAAACCCATTTAAAGTATCATCAAAGAACTCACACAGGTGAAAAACCGTTTAAATGTAATATTTGTTTAAAACTTTTCACACAAAACTTTTATTTAACAGAACATCTAAAATTCACATTGGTGAAAAATCGTTTAAATGCAATATTTGTTCAAAACGTTTTACACTATCAAGATATTACAAAAACATATTATGAGAAATCACCTTGGTGA
- Protein Sequence
- MFVQHLSDKKNHLKTHQRIHTGERPFKCTICSKLFRAKSHLKNHQRIHTGEKPFRCNVCSKLFTYLSNLKKHLRTHTGEKPFKCNICSKIFREKTHLKYHQRTHTGEKPFKCNICLKLFTQNFYLTEHLKFTLVKNRLNAIFVQNVLHYQDITKTYYEKSPW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00057211;
- 90% Identity
- iTF_00057211;
- 80% Identity
- iTF_00057211;