Avir016034.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000825:224528-230307[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 2.8 2.2e+02 2.0 0.0 22 49 277 303 268 308 0.82 2 10 3.5 2.8e+02 1.7 0.1 18 44 301 327 299 330 0.86 3 10 0.45 36 4.6 0.0 21 44 332 355 320 359 0.85 4 10 0.19 15 5.8 0.0 21 48 360 387 356 391 0.86 5 10 0.35 28 4.9 0.3 21 45 388 412 384 419 0.87 6 10 1.3 1e+02 3.1 0.1 21 45 416 440 412 447 0.84 7 10 1.2 97 3.2 0.0 21 44 444 467 440 471 0.88 8 10 0.015 1.2 9.3 0.1 21 51 472 502 464 504 0.86 9 10 1.3 1e+02 3.1 0.1 21 45 500 524 497 531 0.85 10 10 0.0054 0.43 10.7 0.1 21 45 556 580 548 583 0.89
Sequence Information
- Coding Sequence
- ATGACAAAATTAGATCACACACTGCACACTATTGCTGGTTACAATCAGAAAATTAACAAAAAAATGAATGAAATTGAGAATAATTCTAAAGGATTTTTATCTGATATTAAAACCGAAGGAATTGATATTTTCGAGGAATCCAAACTTGAATTCGAGAACATGGATCAATTCGACCTTTGTAAGATCAAAACAGAAAATTGTGTAGAAATAAATTCTCCAACTAAAAGTGATACTGTGTTACTAAGCACAGAAAATATAAAAACTGAAAAATTTGAGTCATATGCAGATATTCAAAAAAGAAAAATTGATCACGAAATTATACAGGGTACATTGGATTTCCCTGTTTTTAGAAATGATACCCATTATTTTGGTGGAAATCGACAAACAAAGCAAACCATCAAAATATATTCTGAAAACAAATGTTTCCTAACTGCTGCAAAAAAATTGGAATATCACTTTGGAAATTTCTATGGAACATGTTCATTATGTGGAGAATTTTTCAATCATAGATTACTTTTTCTAACTCATTTTTATATATACCACTTTTTAGTTAATACTAACAAATCTGGAAATTACAAAAGGAATAGTAGTTCTGCTACAAATCGCATTAAACTAAAAAATCTTGGTTATTTAAAAGAACATTTGGGAACTTACAGTGGACAAAAATTCTTTAAATTTAATATTTGTTTTAAAAGTTACACCACATATCGTTATCTAAAAAGGCATATTAGAACTCACATTAGCAAAAACAATTTTGGATCTGAAATTCGTTTAAAATGTTCTACACAATTCCGTTCTTTAAAAACACATCTTGGAACCCACTCTACTGAAAAAGCTTTTATATGTAAAATTTGTTTAAAATCTTTCACAAAATCCGTTCATTTGAAAACACATATTACACGTCACACTGGCAAAAAGCCTTTTGAATGTAAAATTTGTTCAAAATGTTTTACAGAATCCGGTCATTTAAAAACACATATTAGAACTCACACTGGTGAAAAACCTTTTAAATGTAAAATTTGTACAAAATGTTTTAAACGATCCGATCATTTGAAATTGCATTTTAGAACTCACACTGGCGAAAAACCTTTTGAATGTAAAATTTGTTTAAAATGTTTTTCACGATCCGATGATTTAAAATCGCATATTAGAATTCACACTGGCGAAAAACCTTTTGAATGTAAAATTTGTTCAAAATGTTTTACACATTCCATTTCTTTAAGAGCGCATATTAGAACTCACACTGGCGAAAAACCTTTTAAATGTACCATTTGTCCAAAATGTTTCTCACGATCTGGTGAATTAAAAGTGCATATTAGAACTCACACTGGCGAAAAACCTTTTGAATGTAAAATTTGTTTAAAACGTTTCTCACGATCCGATGATTTAAAAACGCATATTAGAACTCACACTGGCGAAAAACCTTTTGAATGTAAAATTTGTTCAAAATGTTTTACACAATCCATTTCTTTAAAAGCGCATATTGAAACTCACACTGGCGAAAAACCTTTTAAATGTACTATTTGTCCAAAATGTTTCTCACGATCTGGTGATTTAAAAGTGCATATTAGAACTCACACTGGCGAAAAACCTTTTAAATGTAAAAATTGTTCAAAGTGTTTCACACGATCTGATCATTTGAAAACGCATATTAGAACTCACACTGGTGAAAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTTTCACGATCGGGTAATTTAAAAAGGCATATTAAAAATCACAGTGGTGAAAACTCTCATATGTGA
- Protein Sequence
- MTKLDHTLHTIAGYNQKINKKMNEIENNSKGFLSDIKTEGIDIFEESKLEFENMDQFDLCKIKTENCVEINSPTKSDTVLLSTENIKTEKFESYADIQKRKIDHEIIQGTLDFPVFRNDTHYFGGNRQTKQTIKIYSENKCFLTAAKKLEYHFGNFYGTCSLCGEFFNHRLLFLTHFYIYHFLVNTNKSGNYKRNSSSATNRIKLKNLGYLKEHLGTYSGQKFFKFNICFKSYTTYRYLKRHIRTHISKNNFGSEIRLKCSTQFRSLKTHLGTHSTEKAFICKICLKSFTKSVHLKTHITRHTGKKPFECKICSKCFTESGHLKTHIRTHTGEKPFKCKICTKCFKRSDHLKLHFRTHTGEKPFECKICLKCFSRSDDLKSHIRIHTGEKPFECKICSKCFTHSISLRAHIRTHTGEKPFKCTICPKCFSRSGELKVHIRTHTGEKPFECKICLKRFSRSDDLKTHIRTHTGEKPFECKICSKCFTQSISLKAHIETHTGEKPFKCTICPKCFSRSGDLKVHIRTHTGEKPFKCKNCSKCFTRSDHLKTHIRTHTGEKPFKCKICSKCFSRSGNLKRHIKNHSGENSHM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056862;
- 90% Identity
- iTF_00056862;
- 80% Identity
- iTF_00056862;