Avir005365.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00001965:98951-102617[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.057 4.5 7.5 0.0 21 45 13 37 5 44 0.88 2 5 7.4 5.8e+02 0.7 0.0 22 46 42 66 39 72 0.76 3 5 0.82 65 3.7 0.4 21 44 69 92 61 97 0.87 4 5 0.003 0.24 11.5 0.0 21 48 97 124 89 128 0.85 5 5 0.078 6.2 7.0 0.0 21 45 125 149 121 155 0.89
Sequence Information
- Coding Sequence
- TCCAGTCATTTAAAATGTCATATTAGAACTCACACTAACGAGAAACCTTTTAAATGTGAATTTTGTTCGAAATCTTTCACACAATTGAGTAATTTAAAAAAACATATTAAAACTCACACTAACGAGAAAGATTTTAAATGTAAAATTTGTTCGAAATATTTCATACAATTGAGTCATTTAAAAGATCATATTAGAACTCACACTAACGAAAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACAAAATCCTGTCATTTAAAATGTCATATTAGAACTCACACTGGAGAAAAACCTTTTAATTGTAAATTATGTTCGAAATCTTTCACACAATCAGGTAATTTAAAAAACCATATGAAAACTCACACTAACGAAAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACACAATTGAGTAATTTAAAAAGTCACATTAAAACTCACATTGATAAAAACGCTAAGTAA
- Protein Sequence
- SSHLKCHIRTHTNEKPFKCEFCSKSFTQLSNLKKHIKTHTNEKDFKCKICSKYFIQLSHLKDHIRTHTNEKPFKCKLCSKCFTKSCHLKCHIRTHTGEKPFNCKLCSKSFTQSGNLKNHMKTHTNEKPFKCKLCSKCFTQLSNLKSHIKTHIDKNAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00057155;
- 90% Identity
- iTF_00057155;
- 80% Identity
- iTF_00057155;