Avir002509.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00001321:229261-231144[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 2.6 2e+02 2.2 0.5 18 43 209 235 202 240 0.76 2 8 9.2 7.3e+02 0.4 0.1 16 44 236 264 232 268 0.78 3 8 1.3 1e+02 3.1 0.1 21 48 288 315 277 320 0.83 4 8 0.0031 0.24 11.5 0.1 20 46 344 370 337 376 0.88 5 8 1.8 1.5e+02 2.6 0.0 21 44 373 396 369 400 0.87 6 8 0.035 2.8 8.1 0.1 21 45 401 425 397 428 0.89 7 8 0.028 2.2 8.4 0.1 20 44 428 452 425 456 0.92 8 8 0.039 3.1 8.0 0.4 21 46 457 482 453 489 0.84
Sequence Information
- Coding Sequence
- ATGGATGTTTTTAAGGATGCTTCAAATCCATTAATAAATAATCAAATTGAGAGTAATTCTAAAGATTTGTTATCTAATATTAAAACTGAAACCATTGATAATTTCGAAGAATCTAAACTCGACTTTGAGAACTGCTATCAATTCGAACTTAGTAAGGTCAAAACGGAAAGTTGTGCAGAAAAAGTTCCTCCAACAAGTGATATAGTTTTAATAAGCAGAGAAAATATAAAAAACGAAAATGTTGATTTAAATGAGGGTATGCAAGGAAGAAGAAGTTATATCGAAATGAAGACAGGAATTAGGCAGCGTACATCCGATTTCCCTGTTCGTAGTGTTCGTAGAAATAAAATCCATAATTTTGGTGAAAATCGACACACAGTTAAAAAGTATTCTAGGAAAAAATGTTTCCTATCTGCGGCAAAAAAATGGCAACCTCACTTTGGGAAGATCTATGGAGTATGTTCCTCTTGTGGACAATTTTTTCATAATAAATTGCTATTTTTGAACCACTTTTATATTTACCATTTTTTAGTTAATTCTAAAAAATCTGCAAACTTAAGAAAGAATAATGCTGCGACAAAACACATTAACCTAGAGGATCTTGGTAATTTAAACAAACAGATGAGGACTCACAGCAGACAAAAATCCTTTAAATGCGAAATTTGTTTTAAATGTTACACTACATCTTATTATCTAAAAAAACATCGTCAAACTCACTGTGGTGAAAATTCTCTCAGTTGTGAAATTTGTTTAAAACGTTTCACACGAAAAAGTGATTTAAAAAAACATATTAGATCCCATACTGGTGAAAAATCTGTTATAGAAATCGGTCATTTAAAAAGTCATATTAGAACTCACACTGACGAAAAATCTATCATCTGTGAAATTTGTTTAAAATGTTTCACTCAAAAAGGTAGCTTAAAACAGCATATTATTAGTACTCACATTGGTGAAAAATCATTCAAATGTGAAATTTGTTTAAAATGTTTTCCACGGCAAAGTGATTTAAAACAGCACATAAGAATTCACACGTCCGAGAAACCTTTTAAATGTAAAATTTGTTTAAAATGTTTTACACAATCCGGTCATTTAAAAAAACATATTAGAACTCACACTGGTGAAAAACCTTTCAAATGTGAAATTTGTTCAAAATGTTTCATAGGATCCAGTGATTTAAAATCGCATATTAGAACTCACACTGGTGAAAAACCTTTCCGATGTGAAATTTGTTTAAAATGTTTCATAAAATCTCATAATTTAAAAATGCATATTAGAATTCACACGTCTGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCATAGGATCGAGTGATTTAAAAAGGCATATTAGGACTCACACTGGTGAAAAACCTTTCAGATGTGAAATTTGTTCAAAATGTTTTATGGAACAAAGCAATTTAAAACGACATATTGTTAGAATTCACACTAACGAAAAACCTTTTTAA
- Protein Sequence
- MDVFKDASNPLINNQIESNSKDLLSNIKTETIDNFEESKLDFENCYQFELSKVKTESCAEKVPPTSDIVLISRENIKNENVDLNEGMQGRRSYIEMKTGIRQRTSDFPVRSVRRNKIHNFGENRHTVKKYSRKKCFLSAAKKWQPHFGKIYGVCSSCGQFFHNKLLFLNHFYIYHFLVNSKKSANLRKNNAATKHINLEDLGNLNKQMRTHSRQKSFKCEICFKCYTTSYYLKKHRQTHCGENSLSCEICLKRFTRKSDLKKHIRSHTGEKSVIEIGHLKSHIRTHTDEKSIICEICLKCFTQKGSLKQHIISTHIGEKSFKCEICLKCFPRQSDLKQHIRIHTSEKPFKCKICLKCFTQSGHLKKHIRTHTGEKPFKCEICSKCFIGSSDLKSHIRTHTGEKPFRCEICLKCFIKSHNLKMHIRIHTSEKPFKCEICSKCFIGSSDLKRHIRTHTGEKPFRCEICSKCFMEQSNLKRHIVRIHTNEKPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056981;
- 90% Identity
- iTF_00056981;
- 80% Identity
- iTF_00056981;