Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00001384:92699-120650[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.18 15 5.8 0.0 21 48 338 365 330 369 0.86

2 8 0.11 8.5 6.6 0.0 21 52 366 397 364 399 0.90

3 8 3.3 2.6e+02 1.8 0.0 22 43 395 416 392 423 0.90

4 8 2.1 1.7e+02 2.4 0.0 16 51 416 452 408 454 0.75

5 8 0.48 38 4.5 0.1 22 46 451 475 448 478 0.91

6 8 2.1 1.7e+02 2.4 0.0 24 46 481 503 476 508 0.85

7 8 0.14 11 6.3 0.0 21 51 534 564 526 565 0.87

8 8 1.4 1.1e+02 3.0 0.1 21 52 562 593 559 595 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.18	15	5.8	0.0	21	48	338	365	330	369	0.86
2	8	0.11	8.5	6.6	0.0	21	52	366	397	364	399	0.90
3	8	3.3	2.6e+02	1.8	0.0	22	43	395	416	392	423	0.90
4	8	2.1	1.7e+02	2.4	0.0	16	51	416	452	408	454	0.75
5	8	0.48	38	4.5	0.1	22	46	451	475	448	478	0.91
6	8	2.1	1.7e+02	2.4	0.0	24	46	481	503	476	508	0.85
7	8	0.14	11	6.3	0.0	21	51	534	564	526	565	0.87
8	8	1.4	1.1e+02	3.0	0.1	21	52	562	593	559	595	0.86

Sequence Information

Coding Sequence: ATGGAAAGATCTGCAATTAAACACGAAAAAATTGAAATGTTCATCGAACCAAAATCCGAATTTCATTCTTTTGATCAGATGGAATTAAGTAAGAACCAATTTCAAGCAAATCACAGAATAAGTGTTTCCGAAGAAAAAATTAAGTCCGAACCAATCGAGATTCCACACGAAAATGAGAATTGTTATCAAACTGACGGAAATATCGACTTTGATATTAAAAAAGAAGTTTTAAATTCGGTTTGGGATATGTCCCATGTGAAAAAAGATGCCCATGATGATTTACTTTTAGAACGAACGTCCTTCAATTCTGAATCTGAATCGAATCACAACATAGATGTTTCCAAAAAAAATAAAACTGAAGAAAGCGATGTTCTACTCGAAATTGAGAACTCTTATCAAACTTACGGAAATCTTGAGTTTGATATTAAAAAAGAATTTAAAAAGTCGGTTTTTGATGTGTACGATCTGAAGAAAGAGGCTGACGATGAATTACTTTTAGAGGAAACATTCAATTTTGAAGGTTTTCAATCTTCGCCAAAGGGATCAAATTATCATTGTGGGAAGTATTATCGGACATGTGTCTTTTGTGGAAAATGTTTCATTGGTAAACTACTGTTGGTACATCATTTCTATATTTACCACTTTTTACAGCGTACTAAAAACACAATTAAAATTATGAATAATTCTACTAAGAACCTCAACAAAAAATGCCTAAAATTAAAACATATTTATTATGAAATTTGTTTAAAAATGTTTCAGCAAAATCGTTACCTCCAAACTGTAGTTAAAAACAAAAAAGCAGCTTTTTATGTTCAAGAAAACGTCTTAAAAAGTTTTAGACACAAATATAAAATGAATTATCATATGTTTCATAAGAAAGAAACCCCAGATAAATCGTCTTTAAAAAATCATCTAAGAATACGAACTGATACAAAATCCTTTAAATGTACTATTTGTTCAAAATTTTTCACAAAAAAAGATTATTTAAAAAAACATGAAAAAATTCACACCGGTGAAAAACCGTTTAAATGTTACATTTGTTTAAAATTGTTCACACAAAATTGTGCGTTAAAAGAACATGTTAAAATTCACACTGGTGAAAAGCCGTTTAAATGTAATATTTGTTCAAACTATTTCACACAAAAGTCTACTTTAAACAACCATCTAAAAATTCATAATGGTAAAAAACCATATAAATGTGAAGTTTGTTTAAAACTTTTCAGAAGAAAAGGTGATTTAAAAAAACATTCAATAACTCACAGTGGTCAGAAAACATTTAAATGTGAAGTATGTTTAAAACTTTTTAAGAGAAAAGGTGATTTAAAAAATCATCTAAGAATTCATATTGCTGATAAACCGTTAAAATGTAATATTTGTTCAAAACATTTCGCAGATATATCTACTTTAAATCGACATCTAGAAATTCACACTGGTGAAGAACAGTTAAAATGTGATATTTGTTTAAAACTTTTCACAACCAAAGGTAATTTAAAAACACATCTAAGAATTCACACGGATGGTAAATCATTTAAGTGTGAAGTTTGTTCAAAGTTTTTCACACGAAAATGTGCTTTAAAGGAACATGTAAAAATACACTCTGGTGAAAAGCCGTTTAAATGTAATATTTGTTCAATTTATTTCACACAAAAGGCTACTTTAAATAATCATCTTAACATTCATACTGGTGAGAAACCATTTAAATGTGATATTTGTTCAAAACGCTTCACAAGAAAAGATAATTATAAAATTCATCTAAGGATTCATACTGATAAAAAACCGTTTGTTCATAATATTTTAGAGACGGAATAA
Protein Sequence: MERSAIKHEKIEMFIEPKSEFHSFDQMELSKNQFQANHRISVSEEKIKSEPIEIPHENENCYQTDGNIDFDIKKEVLNSVWDMSHVKKDAHDDLLLERTSFNSESESNHNIDVSKKNKTEESDVLLEIENSYQTYGNLEFDIKKEFKKSVFDVYDLKKEADDELLLEETFNFEGFQSSPKGSNYHCGKYYRTCVFCGKCFIGKLLLVHHFYIYHFLQRTKNTIKIMNNSTKNLNKKCLKLKHIYYEICLKMFQQNRYLQTVVKNKKAAFYVQENVLKSFRHKYKMNYHMFHKKETPDKSSLKNHLRIRTDTKSFKCTICSKFFTKKDYLKKHEKIHTGEKPFKCYICLKLFTQNCALKEHVKIHTGEKPFKCNICSNYFTQKSTLNNHLKIHNGKKPYKCEVCLKLFRRKGDLKKHSITHSGQKTFKCEVCLKLFKRKGDLKNHLRIHIADKPLKCNICSKHFADISTLNRHLEIHTGEEQLKCDICLKLFTTKGNLKTHLRIHTDGKSFKCEVCSKFFTRKCALKEHVKIHSGEKPFKCNICSIYFTQKATLNNHLNIHTGEKPFKCDICSKRFTRKDNYKIHLRIHTDKKPFVHNILETE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00057017;
90% Identity: iTF_00057017;
80% Identity: iTF_00057017;