Avir008711.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000317:396660-399919[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.055 4.3 7.5 0.1 26 45 175 194 170 203 0.86 2 10 1.1 89 3.3 0.0 22 45 199 222 194 228 0.83 3 10 0.019 1.5 9.0 0.1 21 50 282 311 272 314 0.87 4 10 1.7 1.4e+02 2.7 0.0 21 45 310 334 307 341 0.85 5 10 1.4 1.1e+02 3.0 0.4 21 47 338 364 334 369 0.73 6 10 0.08 6.3 7.0 0.0 21 45 366 390 362 397 0.87 7 10 1.4 1.1e+02 3.0 0.1 21 45 394 418 390 421 0.88 8 10 0.2 16 5.7 0.2 21 52 422 453 418 453 0.86 9 10 0.021 1.7 8.9 0.0 21 46 450 475 446 481 0.87 10 10 0.2 16 5.7 0.3 21 46 478 503 475 506 0.90
Sequence Information
- Coding Sequence
- ATGGATGTTTTCAAGAATGCTTCAAATCCATTAATGAATAATGAAGTCGATAGTGATTCTAAAGGATTGTTATCTAATATTAAAACCGAAGAAATTGAGGATTTTGAAGAATCTAAACTCAAATTCGAGAACTTTCATCAATTCGACCTTAGTAAGATCAAAACGGAAACTTGTGTAGAAAAAATTTCTCCAAGTAAAAGTGATGTTTTAATAAATAAAAAAATTATAAAAACCGAAAATGAGGGTATTCCAGAAAGAAGTGATGTTGAAATTAAGACAAAAATTATACAGCGAAAAATCAAAACGTATTCTAGGAATAAAAGTTTCCTATCTGCGGCAAAAAAATTGCAACCTCATTTTGGAAAATTCAATGGAACATGTTCCTCTTGTGGACAATTTTTTTGTGATAAATTGCTATTTTTAAACCATTTTTATACATACCACTTTTTAGTTATTTCTACAAAATCTGTTAACTTGAGAAGGAATAATTTTGCTACAAAACATATTGGACAAATATCCTTTAAATGCGAAATTTGTTCAAAATGTTTCACACAATCCAGTAATTTAAAAAAGCATATTAGAAGTCACACTAACGAAAAACATTTTAAATGTAACATTTGTTCAAAATTTTTTATAAAATCCCAAAATTTAGAAATGCATATTAGAACTCATACCGGTAAAAAATCATTCAAATGTGAAGTTCGTTCAAAATATTTCCCACGACAAAGTGATTTAAAAAAGCATATTAGAAATCACAATGATGAGGAACGTTTCAAATGTAAAATTTGTTCAAAATGTTTCGTAGCATTCGCTGATTTAAAAAAGCATATTAGAATTCACACTGGCGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTTACACAATCCAGTCATTTAAATAAGCATATTAGAATTCACACTGACGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTTATAGAATCCGGTCATTTAAAAATGCATATTAGAACTCACACTGGTGAAAAACCATTCAGATGTGAGATTTGTTCAAAATGTTTCACACGACAAAGTGTTTTAAAACAGCATATTAGAATTCACACTGACGAGAAACCGTTTAAATGTAAAGTTTGTTCAAAATGTTTCAGGGCATCCGGTGATCTAAAAAAGCATTTTCGAACTCACACTGGTGAAAAACCTTACAAGTGTGAAATTTGTTCAAGATGTTTTATAGAATCCGGTGTTTTAAAAAAGCATATTAAAACTCATACTGGTGAAAAACCTTTCAAATGTGAGATTTGTTCAAAATGTTTCGCTCAACAAAGTGTCCTAAAACAACATATTAGAATTCACACTGCCGAGAAACCTTTTAAATGTGAAATTTGTTTAAAATGTTTCAGATCATCCGGTGTTTTAAAAAAGCATATTAAAACTCATACAGGTGAAAAACCTTTCAGATGTGAAATTTGTTTAAAATGTTTCTCAGAACAAAGTAACTTAAAACAGCACATTAGAATTCATACGAAAAACCTTTCAAATGTAGTTAATACACACATGGTGTAA
- Protein Sequence
- MDVFKNASNPLMNNEVDSDSKGLLSNIKTEEIEDFEESKLKFENFHQFDLSKIKTETCVEKISPSKSDVLINKKIIKTENEGIPERSDVEIKTKIIQRKIKTYSRNKSFLSAAKKLQPHFGKFNGTCSSCGQFFCDKLLFLNHFYTYHFLVISTKSVNLRRNNFATKHIGQISFKCEICSKCFTQSSNLKKHIRSHTNEKHFKCNICSKFFIKSQNLEMHIRTHTGKKSFKCEVRSKYFPRQSDLKKHIRNHNDEERFKCKICSKCFVAFADLKKHIRIHTGEKPFKCEICSKCFTQSSHLNKHIRIHTDEKPFKCKICSKCFIESGHLKMHIRTHTGEKPFRCEICSKCFTRQSVLKQHIRIHTDEKPFKCKVCSKCFRASGDLKKHFRTHTGEKPYKCEICSRCFIESGVLKKHIKTHTGEKPFKCEICSKCFAQQSVLKQHIRIHTAEKPFKCEICLKCFRSSGVLKKHIKTHTGEKPFRCEICLKCFSEQSNLKQHIRIHTKNLSNVVNTHMV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056885;
- 90% Identity
- iTF_00056885;
- 80% Identity
- iTF_00056885;