Avir001518.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00001178:79825-85237[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.027 2.1 8.5 0.9 25 52 113 140 99 140 0.80 2 5 0.66 52 4.1 0.1 21 44 137 160 133 164 0.89 3 5 0.00076 0.06 13.5 0.0 21 44 165 188 157 195 0.88 4 5 0.4 32 4.7 0.0 22 46 194 218 189 220 0.86 5 5 0.32 25 5.1 0.1 21 44 221 244 217 247 0.89
Sequence Information
- Coding Sequence
- ATGGATGTATGCAAAGAAAAACTACAAGATGGAATTAAAACGGAAGAAATTGAAATTTTCGATGAATTTGGTGAGTACAGTGTAACTATTAAAGAAGACGAAATAGAAATTGATGTATTAAAAGCCGAATTAAATTGTTTCGATCACATCGAAATACTTGAAGAACACGAGGTGAATCTTGAATTTGAAATTAAAAAAGAAGAATTACACACGAGTATAGATTTACCGGACTTTAAAATGGAATTTCAAGATTTTGATGAAGAATTAAATTCAGAGCGGAGCATCAATCGAGATTCCAGAAAACAGAAACCAAGCTGTAAAAATACTGGCGACAAATATAAATGTAAAATATGTTCGAAATGTTTCACACAATCCTGTAATTTAAAATCTCATATTAGAATTCACACTAACGAAAAACCTTTTGAATGTAAAATTTGTTCGAAATGTTTCACACAATTCGCTACTTTAAAAAGTCATATTAGAACTCACACTGGCGAGAAACCTTTTAAATGTAACATTTGTTCGAAATGTTTTAAACAATCCGGTAATTTAAAAACTCATATTACAACTCACAATGACGAAAAAGTTTTTAAATGTAAAATTTGTTTAAAATATTTTTCAACATCCAGTAATTTAAAAACTCATATTAGAATTCACAGTGACGAGACACCTTTTAAATGTGAAATATGTTCAAAACGTTTCAAACATTCTATTAGTTTAAAAAAACACATTAGCACTCAC
- Protein Sequence
- MDVCKEKLQDGIKTEEIEIFDEFGEYSVTIKEDEIEIDVLKAELNCFDHIEILEEHEVNLEFEIKKEELHTSIDLPDFKMEFQDFDEELNSERSINRDSRKQKPSCKNTGDKYKCKICSKCFTQSCNLKSHIRIHTNEKPFECKICSKCFTQFATLKSHIRTHTGEKPFKCNICSKCFKQSGNLKTHITTHNDEKVFKCKICLKYFSTSSNLKTHIRIHSDETPFKCEICSKRFKHSISLKKHISTH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00057132;
- 90% Identity
- iTF_00057132;
- 80% Identity
- iTF_00057132;