Avir014220.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000679:12845-21788[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.49 39 4.5 0.1 27 48 192 213 187 217 0.85 2 9 0.12 9.7 6.4 0.4 22 44 215 237 210 241 0.89 3 9 0.055 4.4 7.5 0.2 21 46 242 267 238 273 0.85 4 9 0.012 0.96 9.6 0.1 22 46 271 295 266 301 0.85 5 9 0.25 20 5.4 0.1 22 46 299 323 294 330 0.84 6 9 0.053 4.2 7.6 0.1 22 46 327 351 321 357 0.85 7 9 0.056 4.4 7.5 0.2 21 46 354 379 350 385 0.86 8 9 0.12 9.5 6.4 0.1 22 44 383 405 378 409 0.89 9 9 0.59 46 4.2 0.9 21 46 410 435 405 442 0.83
Sequence Information
- Coding Sequence
- ATGGATGGTTTAAAAGAAGCGCCAGATTCATTAATAAAATGGAAAGAATTGTTATCTAATATTAAAACCGACGAAATTGAAGAATGTAAACTCGAATTCGAGAACTTGCATCAAATTGACTTTAATATGTTAAAAAGGGAAAGTTCTGTAGAAAGAGTTTCTCCAACTAAAAGTGATGTATTAATAAGCAAAGGTAATATAAAAGCTGAAAATGTGAATTCAAATGATATTATTCAAGAAAGAAAATATATCAAAATTAAGACAGAAATTGTACAGAGTACATTTGACTTCCCTGTTTGTACAAATACTATCCATGATGTTGAAAATCGACAAACAGTACAAACAATCAAATTATATTCAAGGAAAAAATGTTTTCTACCAGCGCCAAAAAAGTATCAACCTCACTTTTGGAAATTTTATGGAACATGTTCCTCTTGTGGACAATTTTTCTCTGATAAATTGCTATTTTTTAACCATTTTTATATATACCACTTTTTAGTTAATTCCAAAAAATCTGTTAACTTAAGGAGGAATAATTCTGATAAAAAACATATTGGACAAATGTACTTTAAATGCGAAATTTGTACAAAATGTTTCACACAATCCAGTGATTTAAAAAGCCATATTAGAATTCACACTGACAAGAAACCTTTTAAATGTAAAATTTGTTTAAAATGTTTCCGAAGAGCAGGTGATTTAAATAGACATATTAGAACTCACACTGGTGAAAAACCTTTTAGATGTGAAATTTGTTCAAAATGTTTCACACAATCCAGTAGCTTAAAAGCTCATATTAGAACTCACACTGGTAAAAAACCTTTTAAATGTAAAATTTGTTTAAAATGTTTCCGAAATTCAGGTGATTTAAATAGACATATTAGAACTCACACTGGTAAAAAACCTTTTAGATGTGAAATTTGTTCAAAGTGTTTCACAGAATCCAGTAACTTAAAAATTCATATTAGAACTCACACTGGTAAAAAACCTTTTAAATGTAAAATTTGTTTAAAATGTTTCCGAAATGCAGGTGATTTAAATAGACATATTAAAACTCACACTGGTGAAAAACCTTTTAGATGTGAAATTTGTTCAAAATGTTTCACACAATCCAGTAGCTTAAAAGCTCATATTAGAACTCACACTGGTAAAAAACCTTTTAAATGTAAAATTTGTTTAAAATGTTTCCGAAATGCAGGTGATTTAAATAGACATATTAGAAGTCACACTGGTGAAAAACCTTTTAGATGTGAAATTTGTTCAAAATGTTTCACACGATCCTGTAGCTTAAAAACTCATATTAGAACTCACACTGGTGAAAAACCTTTTTCACAATTCACAATTCAATTTAATATATAA
- Protein Sequence
- MDGLKEAPDSLIKWKELLSNIKTDEIEECKLEFENLHQIDFNMLKRESSVERVSPTKSDVLISKGNIKAENVNSNDIIQERKYIKIKTEIVQSTFDFPVCTNTIHDVENRQTVQTIKLYSRKKCFLPAPKKYQPHFWKFYGTCSSCGQFFSDKLLFFNHFYIYHFLVNSKKSVNLRRNNSDKKHIGQMYFKCEICTKCFTQSSDLKSHIRIHTDKKPFKCKICLKCFRRAGDLNRHIRTHTGEKPFRCEICSKCFTQSSSLKAHIRTHTGKKPFKCKICLKCFRNSGDLNRHIRTHTGKKPFRCEICSKCFTESSNLKIHIRTHTGKKPFKCKICLKCFRNAGDLNRHIKTHTGEKPFRCEICSKCFTQSSSLKAHIRTHTGKKPFKCKICLKCFRNAGDLNRHIRSHTGEKPFRCEICSKCFTRSCSLKTHIRTHTGEKPFSQFTIQFNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056909;
- 90% Identity
- iTF_00056909;
- 80% Identity
- iTF_00056909;