Avir004072.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00001643:8266-15862[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.041 3.3 7.9 0.1 26 48 189 211 184 215 0.86 2 9 0.18 14 5.9 0.2 21 46 212 237 210 244 0.85 3 9 2.1 1.7e+02 2.4 0.2 26 52 267 293 262 294 0.85 4 9 0.00086 0.068 13.3 0.2 22 52 291 321 286 322 0.85 5 9 0.12 9.9 6.4 0.1 21 48 318 345 315 351 0.86 6 9 0.0015 0.12 12.5 0.1 21 46 374 399 360 406 0.84 7 9 0.83 66 3.7 0.1 21 46 430 455 422 461 0.81 8 9 0.21 16 5.7 0.1 21 45 458 482 451 489 0.86 9 9 1.8 1.4e+02 2.7 0.1 21 47 486 512 482 518 0.82
Sequence Information
- Coding Sequence
- ATGGATCGTTTCAAGGAAGCATCAGATTTATTAATGCATAATAAAATCGAAAGTAATCCTAAAGAACTGTTATCTAATATTAAAACAGAAGAAATTGAAGAATGTAATCTCGAATCCGAGAACTTGCATGAAATTAACTATTATATGATGAAAAGGGAAAGTTCTGAAGAAACTAAAAGTGGTGTTTTAATAAGCACAGAAAATATAAAAACTGAAAATGGTAATTCAAACGAGGGTATTCAAGAAAGAAAAAGTGATAACGAAATTAAGAAATATGATTTCCCTGTTTGTACAAAAGCTATCCATGATTTTGTTGAAGTAGAACAAACTGTGCAAACAATCAAAATGCATTCTAGGAATAAATGTTTTCGGTCTGTGCCAAAAAAGTGGCAAGCTCACTTTGGGAAATTTTATGGAACATGTTTCTCTTGTGGACAATTTTTTTGCGATAATTTGTTATTTTTAAACCATTTTTATATATACCACTTTTTAGTTAATTCCAAAAAATCTGTTAACTTAAGAAAAAATAATTCTGATAAAAAACATATTGGACAAACGTTCTTTAAATGCGAAATTTGTACAAAATGTTTCACCCAATCCAGTGATTTAAAAAGGCATATTAGAATTCACACTGGTGAGAAACCCTTTAAATGTGAAATTTGTTCAAAATGTTTCACACAATCAAGTCATTTAAATAGTCATGTTAGAACTCACAGTCGAGACAAACCTTTTAAATGTTTCACTGATCAAAGTAATTTGAAACAGCATATTAGAATTCACATTGACAAGAAACGTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATCAAGTCATTTAAATAGTCATGTTAGAATTCACAGTCGAGACAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATCAAGTAATTTAAATAGGCATGTTAAAATTCACACTGGTGAGAAACCTTTTAAGTGTGAAATTTGTTCAAAATGTTTCTCTGATCAAAGTAATTTGAAACAGCATATTAGAATTCACATTGACAACAAACCTCTTAAATGTGAAATTTGTTCAAAATGTTTTACAGGAGCCACTGAATTAAAAGGGCATATTAAAAGTCACACAGATGAAAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACAAAATCAAGTAATTTAAAACGGCATGTTAGAACTCACACTGACGAAAAACCTTTTCAATGTGAAATTTGTTCAAAATGTTTTACCCGATTTGATCATTTAAAAACGCATGTTAAAACTCACAGTAACGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACAGGACAAAGTCATTTAAATCGACATGTTAAAACTCATACTGGTGAAAAACCTTTTAAATGTGAAATTTGTTCGAAATGTTTCACACAATCCGGTAGCTTAACTACTCATATTAGAACTCACACTGGTGAAAAACCTTACAAATGTGAAATTTGTTCAAAATGTTTCAAATCTCAAAGTTATTTAAAAGAGCATATTAGATTTCACACTGATGAAAAACCTTTTAAATGTCAAATTTGTCCGAAAGTTTTTAAAAGTGCCAGCCCCTAA
- Protein Sequence
- MDRFKEASDLLMHNKIESNPKELLSNIKTEEIEECNLESENLHEINYYMMKRESSEETKSGVLISTENIKTENGNSNEGIQERKSDNEIKKYDFPVCTKAIHDFVEVEQTVQTIKMHSRNKCFRSVPKKWQAHFGKFYGTCFSCGQFFCDNLLFLNHFYIYHFLVNSKKSVNLRKNNSDKKHIGQTFFKCEICTKCFTQSSDLKRHIRIHTGEKPFKCEICSKCFTQSSHLNSHVRTHSRDKPFKCFTDQSNLKQHIRIHIDKKRFKCKICSKCFTQSSHLNSHVRIHSRDKPFKCKICSKCFTQSSNLNRHVKIHTGEKPFKCEICSKCFSDQSNLKQHIRIHIDNKPLKCEICSKCFTGATELKGHIKSHTDEKPFKCKICSKCFTKSSNLKRHVRTHTDEKPFQCEICSKCFTRFDHLKTHVKTHSNEKPFKCKICSKCFTGQSHLNRHVKTHTGEKPFKCEICSKCFTQSGSLTTHIRTHTGEKPYKCEICSKCFKSQSYLKEHIRFHTDEKPFKCQICPKVFKSASP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056850;
- 90% Identity
- iTF_00056850;
- 80% Identity
- iTF_00056850;