Avir001878.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00001236:103657-109749[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.2 16 5.7 0.0 21 45 226 250 218 257 0.84 2 7 0.76 60 3.8 0.2 21 44 254 277 250 281 0.89 3 7 0.0038 0.3 11.2 0.2 21 45 282 306 278 313 0.86 4 7 0.14 11 6.2 0.1 21 45 310 334 306 338 0.89 5 7 0.02 1.6 8.9 0.2 21 46 338 363 334 370 0.86 6 7 4.9 3.9e+02 1.3 0.1 21 43 366 388 362 393 0.82 7 7 0.045 3.5 7.8 0.0 21 45 394 418 385 423 0.85
Sequence Information
- Coding Sequence
- ATGGATATTTCTGTAATAAAGCAAGAAGAAATAGAAATTGTTGATGAATCAAAATCCGAATTACATTGTTTCGATCAGATGGAAATAATTCAAGAACAGTCCTACAAAAGTAGTATGTTTAAGAAAGAACCGAAATTCGAATACGAAAACTCGCAACAATTCGTAACAATGGATTCGTCAATAAATTCTTTCACTACTAAAAGTGAAATGTTAATCGGCAGTGAAAATAATATTTCAAGTCAAACTAATCTTGAATTTGACATTAAAAAAGAAGAATTAGACTCTATTTGCGATTTACCGGATTTGAAAATGGAATTTCAAAATTTTGATGAAGGGTTACGTTCAGCGCGAAGCATCAAAAGATATTCCAGAAAACAGAGTCCAAGTTGTAAAAAACGTTTCCTATCAGCGGCAAAAAAATGGCAACCTCACTTTGGAAAATTCTTTGGAACCTGTTCATTTTGTGGAAAATTTTTCTATGATAAATTGCTATTTTTAAACCATTTTTATATTTATCACTTTTTTGTCAATTCGAAAAAATCTGTGAACTTAAAAAGGAGTAATTCTGAAACAAATCATATAAACTGGCAAGATCTTATTAATTTAAACAAACAGATAAAGGGGCAAAGTTTCACACAACAAAGTGATTTTAAAAAATATATCAAAACACAAACTGGTGAAAAACCTTTTAAATGTAAGATTTGTTCAAAATGTTTCACAAAATCCAGTCACTTAAAAACTCATATTAGAACTCACACTGGCGAGAAACCTTTTGAATGTAGAATTTGTTCTAAATGTTTCAATCATTCCAGTCATTTAAAAACTCATATTAAAAGTCACACTGACGAGAAACCTTTTAAATGTAAAATATGTTCGAAATGTTTTAATAGATCCAGTAACTTAAATAGACATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCAGAAACTCCAGTCACTTAAATATTCATATTAAAACTCACACTGACGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTTAATAGATCCAGTAACTTAAATAGACATATTAGAACTCACACTGGCGAGAAACCTTTTAAATGTCAAATTTGTTCGAAATGTTTCACAGATTCCAGTCTTTTAAAAGTTCATAATAGAACTCACACTGAAGAGAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTTACACAATCTGGTCATTTAAAAACTCATATTAAAACTCACACTGAAAAAACTTTCAAATGTGATGGATCGTTATTTAAATAG
- Protein Sequence
- MDISVIKQEEIEIVDESKSELHCFDQMEIIQEQSYKSSMFKKEPKFEYENSQQFVTMDSSINSFTTKSEMLIGSENNISSQTNLEFDIKKEELDSICDLPDLKMEFQNFDEGLRSARSIKRYSRKQSPSCKKRFLSAAKKWQPHFGKFFGTCSFCGKFFYDKLLFLNHFYIYHFFVNSKKSVNLKRSNSETNHINWQDLINLNKQIKGQSFTQQSDFKKYIKTQTGEKPFKCKICSKCFTKSSHLKTHIRTHTGEKPFECRICSKCFNHSSHLKTHIKSHTDEKPFKCKICSKCFNRSSNLNRHIRTHTDEKPFKCKICSKCFRNSSHLNIHIKTHTDEKPFKCKLCSKCFNRSSNLNRHIRTHTGEKPFKCQICSKCFTDSSLLKVHNRTHTEEKPFKCKICSKCFTQSGHLKTHIKTHTEKTFKCDGSLFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00057040;
- 90% Identity
- iTF_00057040;
- 80% Identity
- iTF_00057040;