Avir014213.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000679:40709-49055[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.0072 0.57 10.3 0.2 21 44 217 240 209 245 0.90 2 6 0.0013 0.11 12.7 0.2 21 48 245 272 241 276 0.86 3 6 0.13 11 6.3 0.1 21 46 273 298 271 305 0.86 4 6 6.6 5.2e+02 0.9 0.0 21 46 301 326 297 328 0.86 5 6 0.21 17 5.6 0.1 21 44 329 352 326 356 0.91 6 6 0.42 33 4.7 0.0 21 44 357 380 353 384 0.89
Sequence Information
- Coding Sequence
- ATGGATGGTTTCAAAGAAGAATCAGATTCATTAATGAATAATAAAATCGAAAGTAGTCCTAACGAACTGTTATCTAATATTAAAACCGAAAAAATTGAAATTGAAGAATGTAATCTTGAATTCGAGAACTTGCATGAAATTAACTATTATATGATGAAAAGGGAAAGTTCTGAAGAAATTAAAAGTGATGTTTTAATAAGCACAGAAAATATAAAAACTGAAAATGCTAATTCAAATGAGGGTATTCAAGAAAGAAAAAGTGATAACGAAATTAAGAAATATAATTTCCCTGTTTGTACAAAAGCTATCCTTGATTTTGTTGAAGTAGGACGAACTGTGCAAACAATCAAAATGTATTCTAGGAAAAAATGTTTTCTATTAGCGGCAAAAAAATGGCAACCTCACTTTGGAAAATTCTATGGAACATGTTCATCTTGTGGAAAATTCTTCTATGATAAATTGTTATTTTTAAACCATTTTTATATTTACCACTTTTTCGCTTATTCGAAAAAATCTGTTAACTTAAGAAGGAATAATTCTGGCATAAAACATATGAACCGACAAAATCTTGGTAATGTAAACAAACAGATAAGGGCGGACAGTTTCACACAACAAAGTAATTTAAAAAAATATATTAAAACCCACAATGGCGAAAAACCTTTTAAATGTAAGATTTGTTCAAAATGTTTCAGAAAATCCTATTATTTAAATAGGCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATCCAGTGCATTAAAAAGACATATTAGAATTCACACTGGCGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACAAGATCCAGTAATTTAAAAACTCATATAAGAACTCACACTGGTGAGAAACCTTTCAAATGTAAGCTATGTTCGAAATGTTTCACACGAGCTGGTGATTTAAAATCTCACATTAAAATTCACACTGGCGAGAAACCTTTTAAATGTAGATTATGTTCGAAATGTTTCACAAAATCCAGTAATTTAAAAACTCATATTAGAACTCACACTGGTGAGAAACCTTTTAAATGTAAAATTTGTTTAAAATGTTTCACAGAATCTGGTAGTTTAAATAAGCATATTAGAACTCACACTGGCGAAAAAACCATTTGA
- Protein Sequence
- MDGFKEESDSLMNNKIESSPNELLSNIKTEKIEIEECNLEFENLHEINYYMMKRESSEEIKSDVLISTENIKTENANSNEGIQERKSDNEIKKYNFPVCTKAILDFVEVGRTVQTIKMYSRKKCFLLAAKKWQPHFGKFYGTCSSCGKFFYDKLLFLNHFYIYHFFAYSKKSVNLRRNNSGIKHMNRQNLGNVNKQIRADSFTQQSNLKKYIKTHNGEKPFKCKICSKCFRKSYYLNRHIRTHTDEKPFKCKICSKCFTQSSALKRHIRIHTGEKPFKCKLCSKCFTRSSNLKTHIRTHTGEKPFKCKLCSKCFTRAGDLKSHIKIHTGEKPFKCRLCSKCFTKSSNLKTHIRTHTGEKPFKCKICLKCFTESGSLNKHIRTHTGEKTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00057064;
- 90% Identity
- iTF_00057064;
- 80% Identity
- iTF_00057064;