Avir017387.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000959:147470-153153[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.76 60 3.9 0.1 22 44 172 194 167 203 0.86 2 9 2.1 1.7e+02 2.4 0.1 25 44 203 222 195 227 0.85 3 9 0.024 1.9 8.7 0.3 21 46 227 252 223 258 0.89 4 9 3 2.4e+02 1.9 0.1 22 44 256 278 253 283 0.86 5 9 0.014 1.1 9.5 0.6 12 46 273 308 264 311 0.78 6 9 0.08 6.3 7.0 0.1 22 46 312 336 309 341 0.90 7 9 1.5 1.2e+02 2.9 0.0 22 45 340 363 338 370 0.83 8 9 0.016 1.2 9.2 0.2 14 46 359 392 350 395 0.79 9 9 0.3 24 5.1 0.1 21 45 395 419 392 422 0.90
Sequence Information
- Coding Sequence
- ATGGATAATTCTTCAATAAATTCTTTCACTACTAAAAGTGAAATGTTAATTTGCAGTGAAAATGATGTTTCAAGTCAAACTAATCTTGAATTTGACATTAAAAAAGAAGAATTAGACTCTATTTACGATTTACCGGATTTGAAAATGGAATTTCAAAATTTTGATGAACAGTCATGTTCAGAGCGAAGCATCAAAAGATATTCCAGAAAACAGAGTCCAAGTTGTAAAAAAAGTTCCCTATCAGCGGCAAAAAAATGGCAACCCCACTTTGGAAAATTCTATGGAACATGTTCATATTGTGGAAAATTTTTCTATGATAAATTGTTATTTTTAAACCATTTTTATATTTACCACTTTTTCGTTAATTCGAAAAAATCTGTGAACTTAAAATGGAATAATTCTGACACAAAGCATTTTAACCGACAAGATCTTAGTAATTTAAACAAACAGATAAAGATGGACAGTTTAACGCAACAAAGTGATTTAAAAAAATATATTAAAACCCACAATGGCGAAAAACGTTTTAAATGTAAGATTTGTTTAAAATGTTTCACAAATTCCAGTAATTTAAAAATTCATATTAGAACTCACACTGACGAGAAACTTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAAATCGGTAACTTAAAAACTCATATTAGAACTCATACTAACGAAAAGCCTTTTAAATGTAAAATTTGTTTGAGATGTTTCACGCAATCCAGTCATTTAAAAACTCATATGAGAATTCACACTGACGAGAAATCTTTTAAATGTAAGATTTGTTCGAAATGTTTCAAACATTCTAGTACCTTAAAAACTCATATGAGAGCTCACACTGACGAGAAACCTTTTAAATGTGAAATTTGTTCGAAATGTTTCACAGATTCCAATAACTTAAAATGTCATATTAGAATTCACACTGACGAGAGACCATTTAAATGTAAAATTTGTTCGAAATGTTTTACACAATCCGGTCATTTAAAAACTCATATTAGAATTCACACTGACGAGAAATCTTTTAAATGTAAGATTTGTTTGAAATGTTTCAAACATTCTAGTACCTTAAAAACTCATATGAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATATGTTCGAAATGTTTCACAGATTCCAGTAACTTAAAATGTCATATTAGGATTCACACTGACGAGAGACCATTTAAATGTAAAATTTGTTCGAAATGTTTTACACAATCCGGTCATTTAACAACTCATATTAAAACTCACACTGAAAATAACCTTCTAATGTGA
- Protein Sequence
- MDNSSINSFTTKSEMLICSENDVSSQTNLEFDIKKEELDSIYDLPDLKMEFQNFDEQSCSERSIKRYSRKQSPSCKKSSLSAAKKWQPHFGKFYGTCSYCGKFFYDKLLFLNHFYIYHFFVNSKKSVNLKWNNSDTKHFNRQDLSNLNKQIKMDSLTQQSDLKKYIKTHNGEKRFKCKICLKCFTNSSNLKIHIRTHTDEKLFKCKICSKCFTQIGNLKTHIRTHTNEKPFKCKICLRCFTQSSHLKTHMRIHTDEKSFKCKICSKCFKHSSTLKTHMRAHTDEKPFKCEICSKCFTDSNNLKCHIRIHTDERPFKCKICSKCFTQSGHLKTHIRIHTDEKSFKCKICLKCFKHSSTLKTHMRTHTDEKPFKCKICSKCFTDSSNLKCHIRIHTDERPFKCKICSKCFTQSGHLTTHIKTHTENNLLM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056961;
- 90% Identity
- iTF_00056961;
- 80% Identity
- iTF_00056961;