Avir001943.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00001248:195103-199711[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0061 0.49 10.6 0.1 26 47 88 109 81 114 0.83 2 8 0.36 29 4.9 0.1 21 44 111 134 107 138 0.90 3 8 0.073 5.7 7.1 0.1 21 51 139 169 135 172 0.86 4 8 0.069 5.5 7.2 0.1 13 44 224 254 220 258 0.85 5 8 0.1 8 6.7 0.1 21 47 259 285 255 291 0.85 6 8 3.4 2.7e+02 1.8 0.0 21 51 287 317 283 319 0.84 7 8 0.28 22 5.3 0.0 21 47 315 341 311 346 0.86 8 8 0.21 16 5.7 0.2 21 46 343 368 338 374 0.86
Sequence Information
- Coding Sequence
- ATGGATATTTGTGCAATAAAAGAAGAAAAAATTGAAATTATTGATGAATCAAAACCAGAATTAGACAATTTGGATCAGATGAAAAAAATTGAAGAACATGAGGTGAATTTTGAATTTGAAATTAAAAAAGAAGAATTACACTCTACAATAGATTTACCGGATTTTAAAATCGAATTTCAAGATTCTGATGAAGAATTCAATTCAGAGCGAAATTCAACAAAACATGAATCGAGTTATAAAATTATTGCCGATAAATCTTTTAAATGTGAAATTTGTTCCAAGTATTTCACACAATCCAGTAATTTAAAAAGGCATATTAGAACTCACACTAACGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACAGAATCCGGTAATTTAAAATGTCATATTAGAACTCACACTGGAGAAAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACACAATCCAGTAGTTTAAAAACTCATATTAGAATTCACACTGACGAGAAACCATTTAAATGTGAAAATTGTTCGAAATGTTTCAAACAATTGTATTATTTAAAAGATCATATTAAAACTCACACTGACGAGAAACCATTTAAATGTGAAAATTGTTCGAAATGTTTCACAGCATCCAGTTATTTAAAATGTCATATTAAAACTCACACTGACGAGAAACCATTTAAATGTGAAAAAGAAAAACCTTTTAAATGTAAATTATGTTTGAAATGTTTCACACATTCCTGTAATTTAAAAGATCATATTAGAACTCACACTGGAGAAAAACCTTTTAAATGTAAGTTATGTTCGAAATGTTTTACAAAATCCAATAATTTAAAAATTCATATTAGAACTCACACTAACGAAAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACACGAGCCGGTCATTTAAAATCTCACATTAAAATTCACACTGGAGAAAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCGCACAATCCGGTCATTTAAAAAGTCATATTAGAACTCACACAAACGAGAAACCTTTTAAATGTGAAATATGTTCGAAATGTTTCACACATTCCAGTAGTTTAAAAATTCATCTTAGAACTCACAGTGACGAGAAACCTTAA
- Protein Sequence
- MDICAIKEEKIEIIDESKPELDNLDQMKKIEEHEVNFEFEIKKEELHSTIDLPDFKIEFQDSDEEFNSERNSTKHESSYKIIADKSFKCEICSKYFTQSSNLKRHIRTHTNEKPFKCKLCSKCFTESGNLKCHIRTHTGEKPFKCKLCSKCFTQSSSLKTHIRIHTDEKPFKCENCSKCFKQLYYLKDHIKTHTDEKPFKCENCSKCFTASSYLKCHIKTHTDEKPFKCEKEKPFKCKLCLKCFTHSCNLKDHIRTHTGEKPFKCKLCSKCFTKSNNLKIHIRTHTNEKPFKCKLCSKCFTRAGHLKSHIKIHTGEKPFKCKLCSKCFAQSGHLKSHIRTHTNEKPFKCEICSKCFTHSSSLKIHLRTHSDEKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056978;
- 90% Identity
- iTF_00056978;
- 80% Identity
- iTF_00056978;