Avir017141.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000093:212388-216620[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.057 4.5 7.5 0.2 27 46 149 168 144 175 0.89 2 10 2.5 2e+02 2.2 0.1 26 45 176 195 170 202 0.84 3 10 0.92 73 3.6 0.2 21 46 199 224 195 231 0.83 4 10 0.014 1.1 9.4 0.3 22 46 228 252 219 254 0.84 5 10 0.1 8.3 6.6 0.1 21 46 255 280 253 286 0.89 6 10 0.24 19 5.4 0.2 26 46 288 308 283 316 0.85 7 10 5.6 4.5e+02 1.1 0.1 21 45 311 335 306 338 0.80 8 10 0.0029 0.23 11.6 0.2 21 44 339 362 326 366 0.89 9 10 0.18 14 5.9 0.5 21 46 367 392 363 400 0.85 10 10 0.034 2.7 8.2 0.1 21 45 423 447 411 452 0.89
Sequence Information
- Coding Sequence
- ATGCATGAAATTGACTATTATATGATGAAAAGGGAAAGTTCTGAAGAAACTAAAAGTGATGTTTTAATAAGCACAGAAAATATAAAAACTGAAAATGGTAATTCAAATGAGGGTATTCAAGAAAGAAAAAGCGATATCGAAATTAAGAAATATGATTTGCCTGTTTGTACAAAAGCTATCCATGATTTTGTTGATGTAGGACAAACTGTGCAAACAATCAAAATGTATTCTAGGAAAAAATGTTTTCTGTCTGTGCCGAAAAAGTGGCAACCTCACTTTGGGAAATTTTATGGAACATGTTTCTCTTGTGGACAATTTTTTTGCGATAAATTGTTATTTTTAAACCATTTTTATATATACCACTTTTTAGTTAATTCTAAAAAATCTGTTAACTTAAGAAAGAATAATTCTGATAAAAAACATATTGGACAAATGTTATTTAAATGCGAAATTTGTACAAAATGTTTCACACAATCCAGTGATCTAAAAAGGCATATTAGAATTCACACTGACAAGAAATCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATCCAGTAGCTTAAATACTCATATTAGAACTCATACTGGTGAAAAACCTTACCAATGTAAAATTTGTTCAAGATGTTTTACAGGACAAAGTAATTTAAAAATACATATGAGAACTCACAGTCGAGACAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATCAAGTCATTTAAATAGGCATGTTAAAATTCATACTGGCGAGAAACCTATTAAATGTGAAATTTGTTCAAAATGTTTCACTGATCAAAGTAATTTGAAACAGCATATTAGAATTCACATTGACAAGAAATCTTTTAAATGTGAAATTTGTTCAAAATGTTTTACACAATCAAGTCATTTAAATAGGCATGTTAGAACTCACACTGGTGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATATTTTTCACGACCAACTATTTTAAAAAAACATATCAGAATTCACACTGGTGAAAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACACAATCCAGTGATTTAAAAAGGCATATTAGAACTCACACTGGTGAAAAACCATACAGATGTGAAATTTGTTCAAAATGTTTTACACAATCAAGTCATTTAAATAGCCATGTTAGAACTCACACTGGTGAGAAACCTTTTAGATGTGAAATTTGTTCAAAATATTTTTCACGACCAACTATTTTAAAAGAACATATCAGAATTCACACTGGTGAAAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACACAATTCAATGATTTAAAAAGGCATATTAGAACTCACACTGGTAAAACCTCACGGTTATGA
- Protein Sequence
- MHEIDYYMMKRESSEETKSDVLISTENIKTENGNSNEGIQERKSDIEIKKYDLPVCTKAIHDFVDVGQTVQTIKMYSRKKCFLSVPKKWQPHFGKFYGTCFSCGQFFCDKLLFLNHFYIYHFLVNSKKSVNLRKNNSDKKHIGQMLFKCEICTKCFTQSSDLKRHIRIHTDKKSFKCKICSKCFTQSSSLNTHIRTHTGEKPYQCKICSRCFTGQSNLKIHMRTHSRDKPFKCKICSKCFTQSSHLNRHVKIHTGEKPIKCEICSKCFTDQSNLKQHIRIHIDKKSFKCEICSKCFTQSSHLNRHVRTHTGEKPFKCEICSKYFSRPTILKKHIRIHTGEKPFKCEICSKCFTQSSDLKRHIRTHTGEKPYRCEICSKCFTQSSHLNSHVRTHTGEKPFRCEICSKYFSRPTILKEHIRIHTGEKPFKCEICSKCFTQFNDLKRHIRTHTGKTSRL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056855;
- 90% Identity
- iTF_00056855;
- 80% Identity
- iTF_00056855;