Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00000364:275148-283250[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.61 48 4.2 0.0 27 52 190 215 185 217 0.88

2 10 8.2 6.5e+02 0.5 0.1 22 44 213 235 210 240 0.86

3 10 0.0094 0.74 10.0 0.2 21 44 240 263 236 267 0.91

4 10 0.029 2.3 8.4 0.2 21 51 268 298 264 300 0.86

5 10 0.27 21 5.3 0.1 21 46 324 349 316 355 0.89

6 10 1.5 1.2e+02 2.9 0.1 22 46 353 377 349 383 0.86

7 10 0.00025 0.02 15.0 0.7 10 52 396 439 386 446 0.88

8 10 1.1 84 3.4 0.2 22 46 493 517 488 524 0.83

9 10 5 4e+02 1.2 0.1 21 45 520 544 516 547 0.83

10 10 0.13 10 6.3 0.1 21 44 548 571 544 575 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.61	48	4.2	0.0	27	52	190	215	185	217	0.88
2	10	8.2	6.5e+02	0.5	0.1	22	44	213	235	210	240	0.86
3	10	0.0094	0.74	10.0	0.2	21	44	240	263	236	267	0.91
4	10	0.029	2.3	8.4	0.2	21	51	268	298	264	300	0.86
5	10	0.27	21	5.3	0.1	21	46	324	349	316	355	0.89
6	10	1.5	1.2e+02	2.9	0.1	22	46	353	377	349	383	0.86
7	10	0.00025	0.02	15.0	0.7	10	52	396	439	386	446	0.88
8	10	1.1	84	3.4	0.2	22	46	493	517	488	524	0.83
9	10	5	4e+02	1.2	0.1	21	45	520	544	516	547	0.83
10	10	0.13	10	6.3	0.1	21	44	548	571	544	575	0.91

Sequence Information

Coding Sequence: ATGGATGGTTTCAAAGATGCATTAAATTCATTAATGAATAATAAAATCGAAAGTAATCCTAACGAACTATTATCTAATATTAAAACCGAAGAAATTAAAATTGAGGAATGTAATCTCGCATTCGAGAACTTGCATGAAATTGACTACTATAATATGATGAAAAGGGAAAGTTCTGAAGAAACTAAAAGTGATGTTTTAATAAGCACAGAAAATATAAAAACTGAAAATGGTAATTTAAATGCGGGTATTCAAGAAAGAAAAACTGATAACGAAATTAAGAAATATGATTTCCCTGTTTGTACAAAAGCTATCCATGATTTTGTTGAAGTAGGACAAACAATCAAAATGTATTCTAGGAAAAAATGTTTTCTGTCTTTGTCGAAAAAGTGGCAACCTCACTTTGGGAAATGTTATGGAACATGTTTCTCTTGTGGACAATTTTTCTGTGATAAATTGCTATTTTTAAACCATTTTTATATATACCACTTTTTAGTTAATTCCAAAAAATCTGTTAACTTAAGAAAGAATAATTCTGATAAAAAACATATTGGACAAATGTTCTTTAAATGCGAAATTTGTACAAAATGTTTCACACAATCCAGTGATTTAAAATGGCATATTAGAATTCACACTAACAAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACATATTCCAGTAAATTAAAAGTTCATATTAGAACTCACACTGGTGAGAAACCTTTTAAATGTAAAATTTGTTCAAAGTGTTTCACACAATCCAATGTTTTGAAAAGGCATATTAGAACTCACACTGGTGAAAAACCTTACAAATGTGAGATTTGTTCAAAATGTTTCAAAGAATCAGGTCATTTAAATAGACATGTTAGAATTCATACTGGCGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTTATAGGAGCCACTGATTTAAAAATTCATGTTAGATTTCACACAGATGAAAAACCTTTTAGATGTGAAATTTGTTCAAAATGTTTCACACTATCAAGTAATTTAAATACGCATGTTAAAATTCACACTGGCGAGAAAGCTTTTAAATGTGAAATTTGTTCAAAATGTTTTACTCAATCAAGTCATTTAAATACGCATGTTAAAATTCACACTGGCGAGAAAGCATTTAAATGTGAAATTTGTTCAAAATGTTTCATATTACCCGGTACATTAAAAAGGCATATTAGAATTCACACCGGTGAAAAACCTTTCAAATGTGAATTTTGTTCAAAATGTTTCCGACAATCTGATGATTTAAATAGACATATTAAAATTCACACTGGTGAAAAACCTTTTAAATGTAAATTTTGTTCAAGATGTTTTATAGGAGCCACTGATTTAAAAATTCATGTTAGATTTCACACTGATGAAAAACCTTTTAGGTGTGAAATTTGTTCAAAACCTTTCACAAAATTAAGTCATTTAAATACGCATGTTAAAATTCACACTGGCGAGAAAGCTTTTAAATGTGAAATTTGTTCAAAATGTTTCATATCATCCAATCATTTAAAACGGCATATTAGAACTCACACTGGTGAAAAACCTTACAAATGTGAGATTTGTTCAAAGAGTTTCTCACGAAAATGTGACTTAAAAAATCATATTAGAATTCACACTGGCGAAAAACCTTATAAATGCGAAATTTGTTCAAAATGTTTCATAACATCAAGTAATTTAAAAAAGCATACTAAAACTCACACTGGTGAAACCTTACAGTTGTGA
Protein Sequence: MDGFKDALNSLMNNKIESNPNELLSNIKTEEIKIEECNLAFENLHEIDYYNMMKRESSEETKSDVLISTENIKTENGNLNAGIQERKTDNEIKKYDFPVCTKAIHDFVEVGQTIKMYSRKKCFLSLSKKWQPHFGKCYGTCFSCGQFFCDKLLFLNHFYIYHFLVNSKKSVNLRKNNSDKKHIGQMFFKCEICTKCFTQSSDLKWHIRIHTNKKPFKCKICSKCFTYSSKLKVHIRTHTGEKPFKCKICSKCFTQSNVLKRHIRTHTGEKPYKCEICSKCFKESGHLNRHVRIHTGEKPFKCEICSKCFIGATDLKIHVRFHTDEKPFRCEICSKCFTLSSNLNTHVKIHTGEKAFKCEICSKCFTQSSHLNTHVKIHTGEKAFKCEICSKCFILPGTLKRHIRIHTGEKPFKCEFCSKCFRQSDDLNRHIKIHTGEKPFKCKFCSRCFIGATDLKIHVRFHTDEKPFRCEICSKPFTKLSHLNTHVKIHTGEKAFKCEICSKCFISSNHLKRHIRTHTGEKPYKCEICSKSFSRKCDLKNHIRIHTGEKPYKCEICSKCFITSSNLKKHTKTHTGETLQL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00056831;
90% Identity: iTF_00056831;
80% Identity: iTF_00056831;