Avir014276.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000686:148339-152481[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.052 4.1 7.6 0.2 27 46 187 206 182 213 0.88 2 8 0.045 3.5 7.8 0.1 20 44 236 260 229 264 0.85 3 8 0.15 12 6.1 0.2 20 46 264 290 260 296 0.84 4 8 0.21 17 5.6 0.2 22 46 295 319 290 325 0.84 5 8 0.96 76 3.5 0.0 21 44 322 345 318 349 0.88 6 8 0.1 8.2 6.6 0.1 21 51 350 380 346 381 0.86 7 8 0.07 5.5 7.2 0.2 21 48 378 405 375 409 0.86 8 8 0.02 1.6 8.9 0.2 21 52 406 437 402 439 0.89
Sequence Information
- Coding Sequence
- ATGGATGGTTTCAAAGAAGAATCAGATTCATTAATGAATAATAAAACCGAAAGTAATCCTAACGAACTATTATCTAATATTAAAACCGAAGAAATTGAAAAATGTAATCTCGAATTCGAGAACTTGCATGAAATTGACTATTATATGATGAAAAGGGAAAGTTATGAAGAAACTAAAAGTGATGTTTTAATAAGCACAGAAAATATAAAAACTGAAAATGGTAATTCAAATGAGGGTATTCAAGAAAGAAAAAGTGATAACGAAATTAAGAAATATCATTTCCCTGTTTGTACAAAAGCTATCCATGATTTTGTTGAAGTAGGACAAACAATCAAAACGTATTCTAGGAAAAAATGTTTTCTGTCTGTGCCGAAAAAGTGGCAACCTCACTTTAGGAAATTTTATGGAACATGTTTCTCTTGTGGACAATTTTTTTGCGATAAATTGTTATTTTTAAACCATTTTTATATATACCACTTTTTAGTTAATTCCAAAAAATCTGTTAACTTAAGAAAGAATAATTCTGATAAAAAACATATTGGACAAATGTTCTTTAAATGCGAAATTTGTACAAAATGTTTCACACAATCCAGTGATTTAAAAAGGCATATTAGAATTCACACTAACAAGAAAACTTATAAATGTAAAATTTGTTTAAAATGTTTCACATCTTCCAGCAGTTTAAAAGTTCATATTAGATCTCACACTGGTGAGAAACCTTTTGAATGTAAAATTTGTTTAAAATGTTTCACATCTTCCAGCAATTTAAAAGTTCATATTAGATCTCACACTAGTGAGAAACCTTTTGAATGTAAAATTTGTTCAAAATGTTATGTAACAAAAATTAACTTAAAACAGCATATTTTTAGAGATCACATTGGTGAAAAGTCATTGAAATGTGAAATTTGTTCAAAATGTTTCTCACAACAAAAGGATTTAAATCGACACATTAGAACTCATACTGGTGAAAAACCTTTTAAATGTAAAATTTGTTTGAAAGGTTTTCAACAGGCCAGTTATTTAAAAATACATGTCAGAACTCACACTGGCGAGAAACCTTTTAGATGTGAATATTGTTCAAAATGTTTCAAAACATCTAGTGATTTAAAAAGGCATGTTGGAATTCACACTAACGAGAAACCTTTTAAATGTGAAATTTGTTCCAAATGTTTCACACAATCGAGTCATTTAAATACGCATGTTAGAATTCATACTGGCGAGAAACCTTTTAGATGTGAAATTTGTTCAAAATGTTTCGCAAAATCTAGTAATTTAAAAATGCATGTTAGAATTCACACTAACGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACATTATCCAGTACTTTAAAAAACGCATATTAG
- Protein Sequence
- MDGFKEESDSLMNNKTESNPNELLSNIKTEEIEKCNLEFENLHEIDYYMMKRESYEETKSDVLISTENIKTENGNSNEGIQERKSDNEIKKYHFPVCTKAIHDFVEVGQTIKTYSRKKCFLSVPKKWQPHFRKFYGTCFSCGQFFCDKLLFLNHFYIYHFLVNSKKSVNLRKNNSDKKHIGQMFFKCEICTKCFTQSSDLKRHIRIHTNKKTYKCKICLKCFTSSSSLKVHIRSHTGEKPFECKICLKCFTSSSNLKVHIRSHTSEKPFECKICSKCYVTKINLKQHIFRDHIGEKSLKCEICSKCFSQQKDLNRHIRTHTGEKPFKCKICLKGFQQASYLKIHVRTHTGEKPFRCEYCSKCFKTSSDLKRHVGIHTNEKPFKCEICSKCFTQSSHLNTHVRIHTGEKPFRCEICSKCFAKSSNLKMHVRIHTNEKPFKCEICSKCFTLSSTLKNAY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056943;
- 90% Identity
- iTF_00056943;
- 80% Identity
- iTF_00056943;