Avir005725.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00002028:30414-34431[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.063 5 7.3 0.3 22 48 221 247 216 251 0.82 2 6 0.2 16 5.7 0.1 21 45 248 272 244 278 0.90 3 6 0.15 12 6.1 0.1 21 51 304 334 296 337 0.85 4 6 0.06 4.8 7.4 0.1 21 45 360 384 353 390 0.88 5 6 0.0015 0.12 12.5 0.1 21 51 392 422 387 424 0.87 6 6 0.022 1.7 8.8 0.4 21 46 448 473 440 480 0.87
Sequence Information
- Coding Sequence
- ATGGATCGTATCAAAGAAGCATCAAAGCCATTAATGAATATTAAAATAGAAAATAATTCTAAAGAATTGTTATCTACGATTAAAACTGAAGAAATTGAAATTGAAGAATGTAAACTCGAATTCGAGAACTTGCATCAAATAATGAAAATGGAAAGTTCTGTCGAAATAGTTTCTTCAACTAAAAGCCATGTTGTGTTAATAAGCAAAGAAAATATAAAAACTGAAAATGTGGATACAAATAAGGATATTGAAGAAAGAAAATGTGATATTGAAATTAAAACAGACGCAACATCTGATTTCCATGCAAATGTTATCCATGATTTTGTTGGAAATCGACAAACAGGGCAAACAATCAAAATGTATTCTAAGAAAACAAGTTTTCTATTAGCTGCAAAAAAATGGCAACCTCACTTTGGAAAATTCTATGGAACATGTTCATCTTGTGGAAAATTCTTCTATGATAAATTGTTATTTTTAAACCATTTTTATATTTACCACTTTTTCGCTAGTTCGAAAAAATCTGTTAACTTAAGAAGGAATAATTCTGGCATAAAACATATTAACCGACAAAAAAATCTTAGTAATGTAAACAAACAGATAACGGCGGACAGTTTCATACAACAAAGTGATTTAAAAAAATATATTAAAACCCACAATGGCGAAAAACGTTTTAAATGTAAGATTTGTTCAAAATGTTTCACACAATCCTGTAATTTAAAAAGTCATTTTAGAATTCACACTGACGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACAAAATCCAGTAATTTAAAAACTCATATTAGAACTCATACTGACGAGAAACGTTTTAAATGTAAGATTTGTTCGAAAGGTTTCACACGACTCAGTGTCTTAAAAACTCATATTAGAACTCACACTGGCGAAAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACGATCCAGTAGTTTAAAAACTCATATTAGAATTCACACTGACGAGAAACCATTTAAATGTAAGTTTTGTTCAAAATATTTCACAGTTTCCAGTAATCTAATAGTTCATAATAGAACTCACACTGATGAGAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCATAAATTCCAGTAACTTAAAAACTCATATTAAAACTCATATTAAAACTCACACTGCTGAAAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATCCAGTGGATTAAAAAGACATATTAGAATTCACACTGGCGAGAAACCTTTTAAATGTAAAATTTGTTCAAAGAGTTTCACATACATACATGTTTTAAAACAACATATTAGAATTCACACTGGCGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACACAATCCAGTATATTAAATAGGCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTTAA
- Protein Sequence
- MDRIKEASKPLMNIKIENNSKELLSTIKTEEIEIEECKLEFENLHQIMKMESSVEIVSSTKSHVVLISKENIKTENVDTNKDIEERKCDIEIKTDATSDFHANVIHDFVGNRQTGQTIKMYSKKTSFLLAAKKWQPHFGKFYGTCSSCGKFFYDKLLFLNHFYIYHFFASSKKSVNLRRNNSGIKHINRQKNLSNVNKQITADSFIQQSDLKKYIKTHNGEKRFKCKICSKCFTQSCNLKSHFRIHTDEKPFKCKLCSKCFTKSSNLKTHIRTHTDEKRFKCKICSKGFTRLSVLKTHIRTHTGEKPFKCKICSKCFTRSSSLKTHIRIHTDEKPFKCKFCSKYFTVSSNLIVHNRTHTDEKPFKCKICSKCFINSSNLKTHIKTHIKTHTAEKPFKCKICSKCFTQSSGLKRHIRIHTGEKPFKCKICSKSFTYIHVLKQHIRIHTGEKPFKCEICSKCFTQSSILNRHIRTHTDEKPFKC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056976;
- 90% Identity
- iTF_00056976;
- 80% Identity
- iTF_00056976;