Avir004946.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000187:622970-626044[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 9.3 7.3e+02 0.4 0.0 33 48 196 211 180 215 0.74 2 11 0.097 7.7 6.7 0.0 21 47 212 238 208 243 0.87 3 11 0.0047 0.37 10.9 0.1 22 51 241 270 238 271 0.86 4 11 0.096 7.6 6.7 0.1 21 48 268 295 264 299 0.86 5 11 0.21 17 5.6 0.3 21 48 296 323 292 327 0.85 6 11 0.29 23 5.2 0.1 21 46 324 349 320 354 0.89 7 11 0.13 10 6.3 0.1 25 46 356 377 350 383 0.84 8 11 1.2 93 3.3 0.1 22 51 381 410 378 412 0.82 9 11 1.3 1e+02 3.1 0.4 22 52 409 439 404 439 0.84 10 11 0.17 13 6.0 0.0 21 52 436 467 434 469 0.89 11 11 0.024 1.9 8.7 0.4 21 46 520 545 516 549 0.90
Sequence Information
- Coding Sequence
- ATGGATGGTTTAAAAGAAGTGCCAGATTCATTAATGAATAATAAAATGGAAAGTGATCCTAAACAATTGCTATCTAATATTAAAAGAGAAGAAATTGAAGAATGTAATCTCGAAATGGAGAACGTGCATCAAATTGAATTTTATATGATGAAAAGGGAAAGTTGTGTAGAAAACGTTTCTCCAACTAAAAGTGATGTGTTAATAAACAAAGAAAATATAAAAACTGAAAATGATAATTCAAATGAGGGTATTCAAGAAAGAAAATATGATATCAAAACTAAGACAGAAATTGTACAGAGTACATTTGATTTCCCTGTTTGTACAAATGCCATCCATGATGTTGAAAATCGAGAAACAGTTCAAACAATCAAATTGTATTCAAGGAAAAAGTGTTTTCTACCAGCGCCAAAAAAGTATCAACGTCACTTTGGGAAATTTTATGGAACGTGTTCCTCATGTGGACAATTTTTCTGTGATAAATTGCTATTTTTAAACCATTTTTACATTTACCACTTTTTAGTCAAGTCTATAAAATCTGTTAACTTGAGAAGGAATAATTCTGCTACAAAACGTGTTGGACAAATATCGTTCACACAATCTAGTGCTTTAAAAAGGCATATTAGAATTCACACTGATGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACAGACAAAAGTAATTTAAAAAAGCATATTAGAATTCACGTTGACGACAAACCTTTTAAATGCGAAATTTGTTCAAAATGTTTCACACAATCTAGTGATTTAAAAAGGCATATTAGAATCCACAATGATGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCAAAGCCCAAAGTAATTTAAAAGAGCATATTAGAATTCATACTGGCGAGAAACCTTTTAAATGTAAAATTTGTTTAAGATGTTTCACAGCACAAAGTAATTTAAAAAATCATATTAGAATTCATACTGGCGAGAAACCTTTTAAATGTGAAATCTGTTCAAAATGTTTTATAGAATCCAGTAAATTAAAAAAGCATATTAGAATTCACACTAACGAGAAACTTTTTAAATGTAAAATTTGTTCAAAATGTTTTATAGAATCCAGTAACTTAAAAAGGCATATGATAATTCACAATAACGAGAAATCTTTTAAATGTAAAATTTGTTCAAAATGTTTCAAAGCTCAAAGTAATTTAAAAAATCATTTTAGAATTCATACTGACCAGAAACCTTTTAAGTGTGAAATTTGTTTAAAATGTTTCAAAAACCAAAATTATTTAAAACAGCATATTAGAATTCACACTAACGAGAAACCTTTTAAATGTGAAATATGTTCAAAATGTTTTTCACGAGAAGGTAACTTGAAAGAACATATCAAAATTCACACCGGTGGGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCAAAAATCAAATTTATTTTAAAAAACATATTAGAATTCATACTGGTGAAAATTTATTCAAATGTGAAGTATGTTCAAAATGTTTCACACAAACCAGTAGTTTAAAAATGCATGTTAGAATTCACACTGGCGAGAAACCTTTTAAATGTGAAATTTGTTCACAATGTTTTATATCATCCTGTAATTTAAAAAGGCATACTAAAATCCACACTGGTAAAACCTTACAGTTGTGA
- Protein Sequence
- MDGLKEVPDSLMNNKMESDPKQLLSNIKREEIEECNLEMENVHQIEFYMMKRESCVENVSPTKSDVLINKENIKTENDNSNEGIQERKYDIKTKTEIVQSTFDFPVCTNAIHDVENRETVQTIKLYSRKKCFLPAPKKYQRHFGKFYGTCSSCGQFFCDKLLFLNHFYIYHFLVKSIKSVNLRRNNSATKRVGQISFTQSSALKRHIRIHTDEKPFKCEICSKCFTDKSNLKKHIRIHVDDKPFKCEICSKCFTQSSDLKRHIRIHNDEKPFKCEICSKCFKAQSNLKEHIRIHTGEKPFKCKICLRCFTAQSNLKNHIRIHTGEKPFKCEICSKCFIESSKLKKHIRIHTNEKLFKCKICSKCFIESSNLKRHMIIHNNEKSFKCKICSKCFKAQSNLKNHFRIHTDQKPFKCEICLKCFKNQNYLKQHIRIHTNEKPFKCEICSKCFSREGNLKEHIKIHTGGKPFKCEICSKCFKNQIYFKKHIRIHTGENLFKCEVCSKCFTQTSSLKMHVRIHTGEKPFKCEICSQCFISSCNLKRHTKIHTGKTLQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056846;
- 90% Identity
- iTF_00056846;
- 80% Identity
- iTF_00056846;