Avir002657.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00001358:83371-106709[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.6 47 4.2 0.1 22 45 226 249 220 256 0.83 2 9 0.044 3.5 7.8 0.1 21 51 253 283 249 285 0.86 3 9 5.3 4.2e+02 1.2 0.2 22 44 282 304 277 307 0.86 4 9 0.12 9.8 6.4 0.0 16 45 305 334 301 341 0.85 5 9 0.32 25 5.0 0.1 21 45 338 362 334 369 0.86 6 9 0.0032 0.26 11.4 0.1 21 51 366 396 362 398 0.86 7 9 5.8 4.6e+02 1.0 0.1 23 44 396 417 392 421 0.88 8 9 0.0002 0.016 15.3 0.5 16 48 418 450 414 454 0.87 9 9 0.46 36 4.6 0.0 21 45 451 475 447 482 0.87
Sequence Information
- Coding Sequence
- ATGGATATTTCTGTCATTAAACAAGAAGAAATAGAAATTGTTGATGAACCAAAACCCGAATTGCATTGTTTCGATCAGATGGAAATAATTCAAGAAGAGCCCTATGAAAATAGTATGTTTAAAAAAGAATCGAAATTCGAATACGAAAATTTTCAACAATTTGTAACAATGGATGATTCTTTAATAAATTCTGTCACTATTAAAAGTGAAAATGATATTTCTAGTCAAACTAATCAAGAGATCAATATTGAATTTGACATTAACAAAGAAGAATTGCACTCTGTTTGTGATTTACCGGATTTTAAAATGGAATTTCCAGCTTTTGATGAAGAATTAAATTTAGAGCGAAGCATCAAAAGATATTCGAGGAAACAGGATCCAAGTTGTAAAAAGCGTTTTCTATCAGCGACAAAAAAATGGCAACCTCACTTTGGAAAATTCTGTGGAACGTGCTCATCTTGTGGAAAATTCTTCTATGATAAATTGTTATTTTTAAACCATTTTTATATTTACCATTTGTTCCTTACTTCTAAAAAATCTGTTAATTTAAGAAGGAATAATTCTGGCACAAAGCATATTAACCGACAAGATCTTATTAATTTAAACAAACAGATAAGAGCGGACAGTTTCACACAACAAAGTGATTTAAAAAAATATATTAAAACCCACAATGGCGAAAAACGTTTTAAATGTAAGATTTGTTCAAAATGTTTCACACAATCCAGTCAGTTAAAAACTCATATCAGAACTCATACTGGCGAGAAACCTTTTAAATGTAAAATATGTTCGAAATGTTTCACACAATTGGGTAATTTAAAAACTCATATTAGAATTCACACTGAAAAGAAACCTTTTAAATGTGAAATATGTTCGAAATGCTTCAACCATTCTATTAGTTTAAAAACTCATATTAGATCTCACACTGGCGACAAACATCCTTTTAAATGTAAAATTTGTTCGAAATATTTCATAAATTCCAGTAACTTAAAAAGTCATGTTAGAACTCACACTGGCGAGAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCAAACATTTCTGTAACTTAAAAACTCATATTAGAACTCATACTGACGAGAAACCTTTTAAATGTAAAATATGTTCGAAATGTTTCACACAATTGGGTAATTTAAAAAGACATATTAGAATTCACACTGACAAGAAACCTTTTAAATGTGAAATATGTTCGAAATGCTTCAACCATTCTATTAGTTTAAAAACTCATATTAGATCTCACACTGGCGAGAAACAACCTTTTAGATGTAAAATTTGTTCAAAATGTTTCACAAACTCCAGTAATTTAAAAAGACATATTAGAATTCACACTGACGAGAAACCATTTAAATGTAAGTTTTGTTCAAAATGTTTCACAGATTCCAGTAATTTAAAAAGTCATGTTAGAACTCACACTGACGAGAAACCTTTTAAATGTTTTCGAAATGTTTCACACAATCCGGTGAATTAA
- Protein Sequence
- MDISVIKQEEIEIVDEPKPELHCFDQMEIIQEEPYENSMFKKESKFEYENFQQFVTMDDSLINSVTIKSENDISSQTNQEINIEFDINKEELHSVCDLPDFKMEFPAFDEELNLERSIKRYSRKQDPSCKKRFLSATKKWQPHFGKFCGTCSSCGKFFYDKLLFLNHFYIYHLFLTSKKSVNLRRNNSGTKHINRQDLINLNKQIRADSFTQQSDLKKYIKTHNGEKRFKCKICSKCFTQSSQLKTHIRTHTGEKPFKCKICSKCFTQLGNLKTHIRIHTEKKPFKCEICSKCFNHSISLKTHIRSHTGDKHPFKCKICSKYFINSSNLKSHVRTHTGEKPFKCKICSKCFKHFCNLKTHIRTHTDEKPFKCKICSKCFTQLGNLKRHIRIHTDKKPFKCEICSKCFNHSISLKTHIRSHTGEKQPFRCKICSKCFTNSSNLKRHIRIHTDEKPFKCKFCSKCFTDSSNLKSHVRTHTDEKPFKCFRNVSHNPVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056948;
- 90% Identity
- iTF_00056948;
- 80% Identity
- iTF_00056948;