Avir016537.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000881:158386-163906[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00069 0.054 13.6 0.7 17 48 155 186 147 190 0.80 2 10 3.5 2.8e+02 1.7 0.3 27 45 221 239 216 246 0.89 3 10 9.3 7.3e+02 0.4 0.1 22 45 244 267 238 275 0.81 4 10 7.3 5.8e+02 0.7 0.1 26 45 276 295 271 302 0.82 5 10 0.042 3.3 7.9 0.0 22 45 300 323 295 330 0.88 6 10 0.59 46 4.2 0.2 26 48 332 353 323 358 0.82 7 10 0.76 60 3.9 0.0 21 44 411 434 406 438 0.88 8 10 0.015 1.2 9.3 0.1 21 45 439 463 435 470 0.86 9 10 0.17 13 5.9 0.1 21 45 467 491 463 495 0.89 10 10 0.098 7.7 6.7 0.1 21 45 495 519 491 524 0.89
Sequence Information
- Coding Sequence
- ATGGATGTTTTCAAACATGCATCAAATCCATTAATGAATGATGAAATCGAAAGCAATTCTAACGATTTGTTATCTAATATTAAAACCGAAAAAATTGATACTTTCGAAGTAGCTAAAATCGAGTTTGAATCAAATGAGGATATCGAAATTAAGACAGGAATTATGCAGCGTACATTTGATTTGCCTGTTTATAGAAATGCTGTCCACGATTTTGGTGAAAATCTACCAACAGTGCAAGGATTCAAAATGAATTCTAGGAAAAAACGTTTTCTATCTATAGAAAGTGGAACATGTTCATCTTGTGGAAGATTTTTCTATGATAAACTGCTACTTTTACATCATTATTGTATTCACCACTTTGTAGTTAATTCTACACAAAATGTGAACTTGAGTACGAATAATTCTGCCAGAAAACAGATTAATCTAGAAGATTTTGGAAATTTAAAAAAACGGAGGAGAAGGAGGAGGAATTACAGTGGAGAAAAATCCGTAAAATGCGAAATTTGTTTTAAATATTACACCACATCTTATAATTTAAAAAGACATCTTCAAATTCATTTTCGTGAAAGCGTCAAATGCGAATTTTGTCCAAAACGTTTCACACGACATTGTGATTTAAAAAAACATATTAGAACTCACACTGGCGGCAACATTTTTAAATGCACAATTTGTTCAAAATGTTTTACACAGTCCAGTCGTTTACAAAACCACATTAGAACTCACACTGGTGAAAAAGCCTTTAAATGCGAAATTTGTTCTAAATGTTACAGTACATCTTCTTATCTAAAAATACATCTTAAAAGTCACTTTGATGAAAATTTTATCCATTGTGAAATTTGTTCAAGACGCTTTACACAACAAAGTGATTTAAAAAAACATATAAGAACCCACACTGGCGACAAACCTTTTAAATGTGAAATTTGTTCAAAATTGTTCACACAATCCGGTAGTTTAAATAGGCATATTAGATCTCACACTGGTAAAAAATCATTCAAATGTGAAATTTGTTCAAAAACTTTCCTACAACAGTATAATTTAAAACAGCATATTAGAATTCACACTGCCAAGAAACTTTTTAAATGTGAAATATGTTCAAAATGTTTCACCCAAGAAAGTGAGTTAATAAAACATACTAGAACTCACACTGGTGAAAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACACATCAATGTGACTTAATACTACATATTAGAACACACACAGACGAGAAACCTTATAAATGTAAAATTTGTTCAAAAGGTTTCACACAATCCGGTGCTTTAACAACTCATATCAGAACTCACACTGACGAAAGGCCCTTTAAATGTACCATTTGTACAAAATCTTTCACACAATCTGTTAATTTAAAAATTCATATTAGAACTCACACTGGTGAAAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACAGGACAAAGTAACTTAAACCGACATGTTAAAACTCATACTGGTGAAAAACCTTTCAAATGTGAAATTTGTTTAAAATGTTTTATTGTATCCAGTGATTTAAAAAGACATATTAGAACACATACTAAAAAGCTATTAAATGTAGTTAATACCCAAATGTAA
- Protein Sequence
- MDVFKHASNPLMNDEIESNSNDLLSNIKTEKIDTFEVAKIEFESNEDIEIKTGIMQRTFDLPVYRNAVHDFGENLPTVQGFKMNSRKKRFLSIESGTCSSCGRFFYDKLLLLHHYCIHHFVVNSTQNVNLSTNNSARKQINLEDFGNLKKRRRRRRNYSGEKSVKCEICFKYYTTSYNLKRHLQIHFRESVKCEFCPKRFTRHCDLKKHIRTHTGGNIFKCTICSKCFTQSSRLQNHIRTHTGEKAFKCEICSKCYSTSSYLKIHLKSHFDENFIHCEICSRRFTQQSDLKKHIRTHTGDKPFKCEICSKLFTQSGSLNRHIRSHTGKKSFKCEICSKTFLQQYNLKQHIRIHTAKKLFKCEICSKCFTQESELIKHTRTHTGEKPFKCEICSKCFTHQCDLILHIRTHTDEKPYKCKICSKGFTQSGALTTHIRTHTDERPFKCTICTKSFTQSVNLKIHIRTHTGEKPFKCKICSKCFTGQSNLNRHVKTHTGEKPFKCEICLKCFIVSSDLKRHIRTHTKKLLNVVNTQM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056830;
- 90% Identity
- iTF_00056830;
- 80% Identity
- iTF_00056830;