Avir015550.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000078:100364-103478[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.0042 0.33 11.1 0.1 25 48 181 204 168 208 0.80 2 7 0.29 23 5.2 0.1 21 45 205 229 201 237 0.81 3 7 3.4 2.7e+02 1.8 0.1 21 44 233 255 229 259 0.80 4 7 0.025 2 8.6 0.2 21 46 260 285 249 293 0.85 5 7 0.05 4 7.6 0.2 20 44 315 339 302 343 0.85 6 7 0.11 8.5 6.6 0.1 21 44 344 367 339 371 0.90 7 7 0.11 8.4 6.6 0.0 21 45 372 396 368 399 0.89
Sequence Information
- Coding Sequence
- ATGGAAAGTGATCCTAAAGAATTGTTATCTAATATTAAAACCGAAGAAATTGAAATTGAAGAATGTAATCTCGAAATGGAGAACTTGCATCAAATTGACTTTTATATGATGAAAAGGGAAAGTTGTGTTTCTCCCACTAAAAGTGATGTGTTAATAAACAAAGAAAATATAAAAACTGAAAATGATAATTCAAATGAGGGTATTCAAGAAAGAAAATATGATATCAAAATTAAGACAGAAATTGTACAGAGTACATTTGATTTCCCTGTTTGTACAAATGCTATCCAAGATGTTGAAAATCGAAAAACAGTTCAAAAAATCAAATTATATTCAAGGAAAAAATGTTTTCTACCAGCACCAAAAAAGTATCAACCTCACTTTGGGAAATTTTATGAAACATGTTCCTCTTGTGGACAATTTTTCTGTGATAAATTGCTATTTTTAAACCATTTTTATATTTACCACTTTTTAGTTAATTCTATAAAATCTGTTAACTTGAGAAGAAATAATTCTGCTAAAAAACATATTGAACAAAAATCCTATAAATGCAAAATTTGTTCAAAATATTTTACACAGTCCGGTAATTTAAAAAGACATATTAGAATTCACTCTGACGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTAATACGATCCAGTGATTTAAAAGTTCATATTAGAACTCACACTGGTGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTTCAATCCGGTGATTTAAAAGTTCATATTAGAACTCACACTGGTGAGAAACCTTTTAAATGTAAAATTTGTTCTAAATGTTTCCGAAGAGCAGGTCATTTAAATAGACATATTAGAACTCACACTGGTGAAAAACCTTTTAAATGTGAATTTTGTTTAAAATGTTTCACAGATCCCAGTACTTTAACAAATCATATTAAAAGTCACAATAACGAGAGACCTTTTAAATGTAAAATTTGTCCGAAAGGTTTTCAAAGTGCCTGTAATTTAAAAAGGCATATCAGAACTCATACTGGCGAGAAACCTTTTGAATGTAAAATTTGTTCAAAATGTTTCACACAATCCGGTAGCTTAAAAACTCATATTAGAAATCACACTGACGAGAAACCTTTCAAATGTGAAATTTGTTCAAAATGTTTCACACAATCAGGTCATTTAAAAATGCATGTTAGAATCACACTGACGAGAAACCTTTTGAATGTGAAATTTGTTCAAAATGTTTTGTGGGCTCCACTAATTTACAAACACATATTAGAATTCACAATAACGAGAAACCCTTTAAATGTAAAATTTGTTCAAAATGTTTCAGAGCCCAAAGTAATTTAA
- Protein Sequence
- MESDPKELLSNIKTEEIEIEECNLEMENLHQIDFYMMKRESCVSPTKSDVLINKENIKTENDNSNEGIQERKYDIKIKTEIVQSTFDFPVCTNAIQDVENRKTVQKIKLYSRKKCFLPAPKKYQPHFGKFYETCSSCGQFFCDKLLFLNHFYIYHFLVNSIKSVNLRRNNSAKKHIEQKSYKCKICSKYFTQSGNLKRHIRIHSDEKPFKCKICSKCLIRSSDLKVHIRTHTGEKPFKCKICSKCFQSGDLKVHIRTHTGEKPFKCKICSKCFRRAGHLNRHIRTHTGEKPFKCEFCLKCFTDPSTLTNHIKSHNNERPFKCKICPKGFQSACNLKRHIRTHTGEKPFECKICSKCFTQSGSLKTHIRNHTDEKPFKCEICSKCFTQSGHLKMHVRITLTRNLLNVKFVQNVLWAPLIYKHILEFTITRNPLNVKFVQNVSEPKVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056995;
- 90% Identity
- iTF_00056995;
- 80% Identity
- iTF_00056995;