Avir015493.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000774:79146-81198[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 3.5 2.8e+02 1.7 0.0 21 45 222 246 214 253 0.82 2 7 0.21 17 5.7 0.1 22 50 251 279 244 282 0.85 3 7 0.13 10 6.3 0.1 21 44 278 301 274 305 0.90 4 7 0.039 3.1 8.0 0.2 21 45 306 330 302 337 0.86 5 7 0.47 38 4.5 0.1 21 46 334 359 330 365 0.84 6 7 0.035 2.8 8.1 0.2 21 45 362 386 358 389 0.90 7 7 0.0071 0.56 10.4 0.1 21 45 390 414 386 419 0.91
Sequence Information
- Coding Sequence
- ATGGATGTTTTCAAAGATGCATTAAATCCATTTATGAATAATAAAATTAAAAGTAATTCTAAAGATTTGTTATCCAATATTAAAACTGAAGAAATTGATATTGAAGAATGTAAACTCGAATTCGAGAACTTGTATGAATTCGATCGTTGTAAAATCAAAACGGAAAGTTGTGTAGAAAAAGAAGTTTCTCCAACTAAAACTGATGTGTTAATAAGCAGAGAAACTATAAAAACCGAAAATGTTGGTTCAAATGAGAGTATTCAAGAAAGAAAAAGTGATACGGAAAATAAGACAAACATTACACACCGTCCATTTGATTTCCCTGTTAGTAGAAATGAAAATCGACAAAGACTGCAAACAATTAAATTGTATTCTTGGAAAAAACGTTTCCTATCTGCGGCAAAAAGGTGGCAACCTCTCTTAGGAAAATTCTATGGAACATGTCCCTCGTGTGGAAAATTCTTCTATGGCATACGGCTATTTTTAAACCATTTTTATATTTACCACTTTTTTGTGAATTCGAAAAAATCTGTTAGCTTAAGAAGGAATAATTCTGCCACAAAACATATTAACCGACAAGATCTTAGTAATTTAAACAAACAGATAAGGGCGGACAGTCTCACACAACAAAGTAATTTAAAAAAATATATTAAAACCCACAATGTCGAAAAACCTTTTAAATGTAAAATTTGTTCGAAAGGTTTCACAAGTTTCAGTAATTTAAATAGCCATATTAGAACTCACACTGACGACAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCAAACATTCTAGTACCTTAAAAACTCATATTAGAATTCACACTGACGAGAAACCTTTTAAATGTAAAATATGTTCGAAATGTTTCATTACTTCCAGTAACTTAAAAACTCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTTACACAATCCAGTCACTTAAAAACTCATATTAGAACTCACACTGAGGAGAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCACAGATTCCAGTTATTTAAAAACTCATATTAGAACTCACACTAACGAGAAACCTTTTAAATGTGAAATATGTTCGAAATGTTTCAATGATTCCAGTAACTTAAAATGTCATATTAGAATTCACACTGATGAGAGACCATTTAAATGTAAAATTTGTTCGAAATGTTTTACACAATCCGGTAATTTAAAAACTCATATTAAAACTCACACTGAAAAAAACTTTCAAATGTGA
- Protein Sequence
- MDVFKDALNPFMNNKIKSNSKDLLSNIKTEEIDIEECKLEFENLYEFDRCKIKTESCVEKEVSPTKTDVLISRETIKTENVGSNESIQERKSDTENKTNITHRPFDFPVSRNENRQRLQTIKLYSWKKRFLSAAKRWQPLLGKFYGTCPSCGKFFYGIRLFLNHFYIYHFFVNSKKSVSLRRNNSATKHINRQDLSNLNKQIRADSLTQQSNLKKYIKTHNVEKPFKCKICSKGFTSFSNLNSHIRTHTDDKPFKCKICSKCFKHSSTLKTHIRIHTDEKPFKCKICSKCFITSSNLKTHIRTHTDEKPFKCKICSKCFTQSSHLKTHIRTHTEEKPFKCKICSKCFTDSSYLKTHIRTHTNEKPFKCEICSKCFNDSSNLKCHIRIHTDERPFKCKICSKCFTQSGNLKTHIKTHTEKNFQM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00057037;
- 90% Identity
- iTF_00057037;
- 80% Identity
- iTF_00057037;