Avir007694.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000277:313546-318460[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.91 72 3.6 0.1 14 48 179 211 171 215 0.73 2 10 0.017 1.3 9.2 0.1 21 49 240 268 232 272 0.88 3 10 0.83 65 3.7 0.1 22 52 270 300 265 300 0.85 4 10 0.063 5 7.3 0.1 20 47 296 323 293 328 0.87 5 10 0.76 60 3.9 0.0 21 44 325 348 321 352 0.89 6 10 6.1 4.8e+02 1.0 0.0 21 44 353 376 346 380 0.78 7 10 0.048 3.8 7.7 0.2 22 44 382 404 373 409 0.88 8 10 0.3 24 5.1 0.0 21 52 409 440 405 441 0.88 9 10 0.43 34 4.6 0.0 21 52 437 468 435 468 0.88 10 10 0.14 11 6.2 0.4 21 51 465 495 461 496 0.87
Sequence Information
- Coding Sequence
- ATGGATGTTTTGAAAGATACATCAAATCCATTAATAAAAAATAATAAAATCAAAAGTAATTCTAAATATTTGGTACCCAATATTAAAACCGAAGACATTGATATTGAAGAATGTAAACTCGAATTCGAGAACTTGCATAAATTCGATCTTTGTAAGATCAAAACGGAAAGTTGTGTAGAAAAAGTTTCTCCAACTAAAAGTGATGTTTTAATGAGCAGAGAAAATATAAAAACCGAAAATGTTGATTCAAATGAGGTTATTCAAGAAAGAAAAAGTGATATCGAAGTTAAGACAGACATTAGACACCGTCCATTTGATTTTCCTGTTTCTAAAAATGATATCCATGATTTTGGTGAAAATCGACAAAAAGTGCGAACAATCAAAATGCGTTCTAGGAAAAAACGTATCCTATCGGTAGAAAGTGGAATATGTTCATCTTGTGGAAGATTTTTCTATGATAAACTGCTACTTTTACACCATTATTGTATTCACCACTTTGTAGTTAACTTGAGTAGGAATAATACTGCTACAAAAAAGAGGAGGACTTACAGTGGACAAAAATCATTTAAATGTGAAATTTGTTTTAAATATTACACCACACCTACTTATCTAAAAAAACATCTTCAAATTCATTTTCGTGAAAGTCTCAAATGCGAATTTTGTTCAAAACGTTTTACACGAAATTATGATTTAAAAAGACATATTAAAATCCACACTGGTGAAAAACCTTTTAAATGCAAAATTTGTTCAAAATGTTTCACACAAAACGGAAATTTAAAACAGCATATTATTAGAACTCACACTGACAAGAAACCCTTTAAATGTAAATTTTGTTCAAAATGTTTTACACAATCCAGTCATTTAAAAATGCATATTAGAATTCATACGTCTGAAAAACCTTTTAAATGTAAAATGTGTTCCAAATGTTTCACACAATCCTATAGTTTAAAAGTTCACATTAGATTTCACACTGGTGAAAAACCTTTCAAATGTAAAATTTGTTCAAAATCTTTCTCACAGTCCGGTTATTTAAACAGCCATATTAGATCTCACACTGGTGAAAAAGCATTTAAATGCGAAATTTGTTTTAAACATTTTACAGGACAAAGTGATTTAAAAAAACATATTAGAACCCACACTGGCGACAAACCTTTTAAATGTAAAATGTGTTCGAAATGTTTCACACAATCCCATGCTTTAAAAAGGCATATTAGAACTCACACTGGTGAAAAACCTTTCAGATGTGAAATTTGTTCAAATTGTTTTACAGAAAAAGGTAGCTTAAAAAAGCATATGAGACTTCACACTGGTGAAAAACCATTTAAATGTAAAATTTGTTCAAAATGTTTTACACATTCCGATAGTTTAAAAGTTCATATTAATACTCACACTGTCGAAAAACCTCACAAATGTGAGATTTGTTTAAAATGTTTCAAACAAAAAAGTTATTTAAAACAGCATAGTAGAACTCACACACTGGCGAAAAACCTTACAAATTTGAAATTTGATCAAAATGTTTCAAAGAATCCTGTGATTTAA
- Protein Sequence
- MDVLKDTSNPLIKNNKIKSNSKYLVPNIKTEDIDIEECKLEFENLHKFDLCKIKTESCVEKVSPTKSDVLMSRENIKTENVDSNEVIQERKSDIEVKTDIRHRPFDFPVSKNDIHDFGENRQKVRTIKMRSRKKRILSVESGICSSCGRFFYDKLLLLHHYCIHHFVVNLSRNNTATKKRRTYSGQKSFKCEICFKYYTTPTYLKKHLQIHFRESLKCEFCSKRFTRNYDLKRHIKIHTGEKPFKCKICSKCFTQNGNLKQHIIRTHTDKKPFKCKFCSKCFTQSSHLKMHIRIHTSEKPFKCKMCSKCFTQSYSLKVHIRFHTGEKPFKCKICSKSFSQSGYLNSHIRSHTGEKAFKCEICFKHFTGQSDLKKHIRTHTGDKPFKCKMCSKCFTQSHALKRHIRTHTGEKPFRCEICSNCFTEKGSLKKHMRLHTGEKPFKCKICSKCFTHSDSLKVHINTHTVEKPHKCEICLKCFKQKSYLKQHSRTHTLAKNLTNLKFDQNVSKNPVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056915;
- 90% Identity
- iTF_00056915;
- 80% Identity
- iTF_00056915;