Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00000093:197764-201189[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0054 0.43 10.7 0.1 21 45 242 266 236 269 0.90

2 11 0.073 5.8 7.1 0.2 21 44 269 292 267 295 0.92

3 11 0.099 7.8 6.7 0.7 21 45 297 321 292 324 0.86

4 11 0.69 54 4.0 0.3 18 44 321 347 320 351 0.89

5 11 0.23 19 5.5 2.3 21 45 352 376 344 383 0.82

6 11 0.11 8.4 6.6 0.2 21 47 408 434 395 439 0.86

7 11 0.0028 0.22 11.7 0.2 21 44 436 459 432 462 0.91

8 11 0.0081 0.64 10.2 0.0 21 45 464 488 460 496 0.86

9 11 0.4 31 4.8 0.1 21 44 554 577 545 581 0.85

10 11 0.1 8.3 6.6 0.1 21 46 582 607 577 612 0.89

11 11 2 1.5e+02 2.5 0.1 22 44 611 633 607 641 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0054	0.43	10.7	0.1	21	45	242	266	236	269	0.90
2	11	0.073	5.8	7.1	0.2	21	44	269	292	267	295	0.92
3	11	0.099	7.8	6.7	0.7	21	45	297	321	292	324	0.86
4	11	0.69	54	4.0	0.3	18	44	321	347	320	351	0.89
5	11	0.23	19	5.5	2.3	21	45	352	376	344	383	0.82
6	11	0.11	8.4	6.6	0.2	21	47	408	434	395	439	0.86
7	11	0.0028	0.22	11.7	0.2	21	44	436	459	432	462	0.91
8	11	0.0081	0.64	10.2	0.0	21	45	464	488	460	496	0.86
9	11	0.4	31	4.8	0.1	21	44	554	577	545	581	0.85
10	11	0.1	8.3	6.6	0.1	21	46	582	607	577	612	0.89
11	11	2	1.5e+02	2.5	0.1	22	44	611	633	607	641	0.88

Sequence Information

Coding Sequence: ATGGATGGTTTCAAAGAAGAATCAGATTCATTAATGAATAATAAAATCGAAAGTAATCCTAACGAACTATTATCTAATTTTAAAACAGAAGAAATTGAAATTGAAGAATGTAATCTCGAATTCGAGAACTTGCATGAAATTGACTATTATATGATGAAAAGGGAAAGTTGTGAAGAAACTAAAAGTGATGTTTTAATAAGCACAGAAAATATAAAAACTGAAAATTTTAATTCAAATGAGGGTATTCAAGAAAGAAAAAGCGATATCGAAATTAAGAAATTTGATTTCCCTGTTTGTACAAAAGCTATCCATGATTTTGTTGAAAATCGACAAACAGTGCAAACAATCAAAATGTATTCTAGGAAAAAATGTTTCCTATCTGCGGCAAAAAAATGGTATCATCATTTTGGGAAATTCAATGGAACATGTTTGTATTGTGGACAATTTTTTTGTGTTAAATTGTTATTTTTACATCATTTTAGTATTTACCATTTTATAGTTAAATCTAAAAAATCTGTTGATTTGAGAATGAATAATTCTGCTACTAAACATATTGGACAAATATCCTTTAAATGCAAAATTTGTTCAAAATACTTCAAAGATCAAAATTATTTAAATCAGCATATTATACTTCACACTGGTGAAAAATTATTCAAATGTGAATATTGTTCGAAATGTTTCACAAAATCCAAGCGTTTAAAAATGCATGTTAGAATTCACACTAACGAGAAACCTTTTAAATGTGATATTTGTTCAAAATGTTTCCGAAGATCTGATACTTTGAAAAGGCATGTTATGATTCACACTGAAAAACCTTTTAGATGTAAAATTTGTTCAAAATGTTTCAAAAGATCTAGTAATTTAAAAATTCATGTTAGAAGTCACACTGGCGAGAGACCATTTAAATGTGAAATTTGTGCAAAATGTTTTCGAAGATCCGATTGTTTGAAAAGTCATATTAGGATTCACACTGAAAAACCTTTTAGATGTGAAATTTGTTCAAAATGTTTCAAAAGCTCTAGTCATTTAAAAATTCATGTTAGAAGTCACACCGGCGAGAGACAATTTAAATGTGAAATTTGTGCAAAATGTTTCCGAAGATCTGCTTGTTTGAAAAGGCATATTATGATTCACACTGGTGAAACACCGTTCAGATGTAAAATTTGTTCAAAATGTTTCACATCTCCCAGTGATTTAAAAATTCATATTAGAATTCACACTGGTGAAAAACCGTTCAGATGTGAAATTTGTTCAAAATGTTTCATACATTCCAGTAATTTAACAACTCATCTTAGAACTCACACTAACGAGAAACCTTTTAAATGTGTAATTTGTTCAAAATGTTTCAAACAATCCAATACTTTAAAAAGGCATATTAGAACTCACACTGATGAGAAACCTTTTAAATGTAAAATATGTTCGAAATGTTTCACACAATCCGATGATTTAAAAAGGCATACTAGAACTCACACTGGCGAAAAACCTTTTAGATGTGAATATTGTTCAAAGTGTTTCACAGTAAGTGGAAGCTTAAAACATCATCTTATTAGAGTTCACACTGGTGAAAAGTCATTCAAATGTGAAATTTGTCTAAAATGTTTCACACTACAAATTGATTTAAAACAACATATTAGAACTCACAATATTAGAACTCACTCTGCAGATAAACCTTTTAAATGTAAAGTTTGTTCGAAATGTTTTCACAATTCCACTAATTTAAAAGTTCATGTTAGAACGCACACTGGTGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCATACAATCTAGTAGTTTAAAATCGCATGTTAAAATTCACACTGGCGAGAAAGCTTTTAAATGTGAAATTTGTTCACAATGTTTTTCACACTCCGGTAGTTTAAAAAGGCATATTATAACTCACACTGGTGAAAAATCTTACAGATGTGAGCTTTGTTCAAAATGTTTCTCGCGAAAAACTCACTTAAAAAATCATATCATAAAAAAGCACACTGGTGAAAAAATATTTCAAATGTGA
Protein Sequence: MDGFKEESDSLMNNKIESNPNELLSNFKTEEIEIEECNLEFENLHEIDYYMMKRESCEETKSDVLISTENIKTENFNSNEGIQERKSDIEIKKFDFPVCTKAIHDFVENRQTVQTIKMYSRKKCFLSAAKKWYHHFGKFNGTCLYCGQFFCVKLLFLHHFSIYHFIVKSKKSVDLRMNNSATKHIGQISFKCKICSKYFKDQNYLNQHIILHTGEKLFKCEYCSKCFTKSKRLKMHVRIHTNEKPFKCDICSKCFRRSDTLKRHVMIHTEKPFRCKICSKCFKRSSNLKIHVRSHTGERPFKCEICAKCFRRSDCLKSHIRIHTEKPFRCEICSKCFKSSSHLKIHVRSHTGERQFKCEICAKCFRRSACLKRHIMIHTGETPFRCKICSKCFTSPSDLKIHIRIHTGEKPFRCEICSKCFIHSSNLTTHLRTHTNEKPFKCVICSKCFKQSNTLKRHIRTHTDEKPFKCKICSKCFTQSDDLKRHTRTHTGEKPFRCEYCSKCFTVSGSLKHHLIRVHTGEKSFKCEICLKCFTLQIDLKQHIRTHNIRTHSADKPFKCKVCSKCFHNSTNLKVHVRTHTGEKPFKCEICSKCFIQSSSLKSHVKIHTGEKAFKCEICSQCFSHSGSLKRHIITHTGEKSYRCELCSKCFSRKTHLKNHIIKKHTGEKIFQM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00056805;
90% Identity: iTF_00056805;
80% Identity: iTF_00056805;