Avir009014.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000335:380502-384205[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 8.2 6.5e+02 0.5 0.0 25 45 136 156 131 163 0.84 2 10 0.41 32 4.7 0.1 22 48 161 187 152 193 0.84 3 10 3.7 2.9e+02 1.7 0.1 22 45 190 213 186 216 0.88 4 10 0.0046 0.36 11.0 0.1 20 51 216 247 213 249 0.88 5 10 0.0056 0.44 10.7 0.1 23 44 247 268 243 271 0.90 6 10 0.32 25 5.1 0.3 21 45 273 297 268 304 0.84 7 10 9.5 7.5e+02 0.3 0.1 22 47 303 328 298 333 0.79 8 10 1.1 90 3.3 0.1 21 44 330 353 326 357 0.90 9 10 0.009 0.71 10.0 0.3 21 46 358 383 353 389 0.89 10 10 0.0058 0.46 10.6 0.4 21 48 414 441 405 446 0.87
Sequence Information
- Coding Sequence
- ATGCAAGGAAGTAAAATCGAAGTTAAGGCAGAAATTATGCAACGTTCAGTTGATTTCCCTGTTTGTACAAATGATATCCATGATTTTGATGAAAATCGACAAACAGAACAAACAATCAAAATGTTTTCTAGGAAAAAATGTTTCCTGTCTGCGGCAAAAAAATGGCAACCTCACTTTGGGAAATTCTATGGAACATGTTCTTCTTGTGGACAGTTTTTCTATGATAAATTGCTATTTTTAAACCATTTTTATATTTACCACTTTTTAGTTAATTCTAAAAAAAATGTTAACTTAAGAAGGAATAATTCTGCTACAAAACACATTAACATAGAAGATTTTGGTTATTCAAACCGAGAGATAAGAACTCACAGTGGACAAAAATCTTTTCACTTTGTTAGAAATTCGGTCAGTTGTGAAATTTGTTCAAAACGTTTCACTCAACTAAGTGATTTAAAAAAACATATTAGAACCCACACTGGCGACAAACCTTTTAAATGCAAAATTTGTTTAAAATGTTTCACACAAAACGGACATTTAAAACAGCATATTATTGGAACTCACACTGACAAGAAACCCTTTAAATGTAAATTTTGTTCAAAGTGTTTCATACAATCCAGTCATTTAAAAATGCATATTAGAATTCATACGTCCGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATCAAGTCATTTAAAAGTGCATATTAAAATTCACACTGACAAAAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTTATACAATCTGGTAATTTAAAAAGGCATATTAGAAGTCACACCGGTGAAAAACCTTTCAGATGTGAAATTTGTTCGAAATGTTTCAAACAAAAAAGTAGCGTAAAACAGCATATTATTAGAGCTCACAATGGTGAAAAGTCATTTAAATGTGAAATTTGTTCAAAATGTTTCCCACGACAGAATGATTTAAAACAACATATTAGAATTCACACTGACGAGAAACCTTTTAAATGTCAATTTTGTTCAAAATGTTTTATACAATCTGGTCATTTAAAACAGCATGTTAGAACGCACACTGACGAGAAACCTTTTATATGTAAAATTTGTTCAAAATGTTTTACACAATCAAGTCATTTAAGAATGCATATTAGAATTCACACGGACGGGAAATCTTTTAAGTGTGAAATTTGTTCAAAATGTTTTATAGGAAACAGTGATTTAAAAAGGCATATTAGAACTCACACTGGTGAAAAACCTTTCAAATGTGAAATTTGTTTAAAATGTTTCACTGAAAAAAGCAACTTGAAACGGCATATTAAGAGAACTCACACCAACGAAAAACCTCTTAATAAACAAATAAATTTTTAA
- Protein Sequence
- MQGSKIEVKAEIMQRSVDFPVCTNDIHDFDENRQTEQTIKMFSRKKCFLSAAKKWQPHFGKFYGTCSSCGQFFYDKLLFLNHFYIYHFLVNSKKNVNLRRNNSATKHINIEDFGYSNREIRTHSGQKSFHFVRNSVSCEICSKRFTQLSDLKKHIRTHTGDKPFKCKICLKCFTQNGHLKQHIIGTHTDKKPFKCKFCSKCFIQSSHLKMHIRIHTSEKPFKCKICSKCFTQSSHLKVHIKIHTDKKPFKCEICSKCFIQSGNLKRHIRSHTGEKPFRCEICSKCFKQKSSVKQHIIRAHNGEKSFKCEICSKCFPRQNDLKQHIRIHTDEKPFKCQFCSKCFIQSGHLKQHVRTHTDEKPFICKICSKCFTQSSHLRMHIRIHTDGKSFKCEICSKCFIGNSDLKRHIRTHTGEKPFKCEICLKCFTEKSNLKRHIKRTHTNEKPLNKQINF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056890;
- 90% Identity
- iTF_00056890;
- 80% Identity
- iTF_00056890;