Avir010404.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000410:229820-232221[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.033 2.6 8.2 0.2 18 49 108 139 101 144 0.75 2 9 3.6 2.8e+02 1.7 0.0 22 52 141 171 135 172 0.81 3 9 0.55 44 4.3 0.1 22 44 169 191 160 195 0.89 4 9 0.34 27 5.0 0.1 21 46 196 221 190 227 0.84 5 9 0.0015 0.12 12.5 0.2 22 46 225 249 220 255 0.85 6 9 0.76 60 3.8 0.4 21 45 252 276 248 285 0.86 7 9 0.24 19 5.5 0.0 21 47 308 334 304 339 0.85 8 9 0.026 2 8.6 0.1 21 44 336 359 332 363 0.90 9 9 0.086 6.8 6.9 0.3 21 48 364 391 360 395 0.87
Sequence Information
- Coding Sequence
- ATGCAGTGTACATTTGGTTTTCCTGTTTGTAGAAATGAAATCCATAATTTTGGTGAAAATCGACATATAGTGCAAACAATCAAAATGAATTCTAAGAAAAAATATTTCTTACATGCGGCAAAAAAATGGCGACCTCACTTGGAGAAATTGTATGGAATATGTCCTTGTGGACAATTTTTCTATGATAAATTGCTATTTCTTAACCATTTTTATATTTACCACTTTTTAATTAATTCTAAAAAATCTGTTTACTCGAGAAAGAATAATTCTGCTACAAAACACATTAACCTAGAAGATCTTGGTAATTTAAACAAACATATAAGGACTCGCAGTGGACAGAAATCCTTTAAATGTAAAATTTGTTTCAAGTGTTACAACACATCTTATAATCTAAAAAAACATCGTCAAACTCACTTTGGTGAAAATTCTGTCAGTTGTGAAATTTGTTCAAAACGTTTCACACGAAAAAGTGATTTAAAAAAACATATTAAAACACACGCTGTCGACAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCACACAATCCGGTCATTTAAAAACTCATACTAGAACTCACACTGGCGAAAGACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCATAAAATTCACTGATTTAAAAAGGCATATTAGAACTCACACTGGCGATAAACCTTTCAGATGTGAAATTTGTTCAAAATGTTTCACACAATCCTTCAATTTAAAAAGACATATTAGAACTCACACTGGTGAAAAACCTTTCAGATGTGAAATATGTTCAAAATGTTTCACACAACAAAGTCATTTAAAAATTCATATTAGAGTTCACATTGACGAAAAATCTTTTAAATGTAAAATTTGTTCCAAATGTTTCTCTCGTCAAAGTGATTTAAATCAGCATATTATAATTCACACTGACGAAAAACCTTTTAAATGTAAAATTTGTTCGAAAGGTTTCAAAAAATCCAGTCATTTAAAAATGCACATTAGAACTCACACTGCCGAGAAACCCTTTAAATGTGAAATTTGTTCAAAATGTTTCATAAAGTCGTCTGATTTAAAAAGGCATATTAGAACTCACACTGGCGAAAAACCGTTCAGATGTGAAATTTGCACAAAATGTTTTACAGAACAAAGCAACGTAAAACGGCATATTGTTAAAACTCACACTAACGAAAAATCCTTTAAATGTAATTAA
- Protein Sequence
- MQCTFGFPVCRNEIHNFGENRHIVQTIKMNSKKKYFLHAAKKWRPHLEKLYGICPCGQFFYDKLLFLNHFYIYHFLINSKKSVYSRKNNSATKHINLEDLGNLNKHIRTRSGQKSFKCKICFKCYNTSYNLKKHRQTHFGENSVSCEICSKRFTRKSDLKKHIKTHAVDKPFKCKICSKCFTQSGHLKTHTRTHTGERPFKCKICSKCFIKFTDLKRHIRTHTGDKPFRCEICSKCFTQSFNLKRHIRTHTGEKPFRCEICSKCFTQQSHLKIHIRVHIDEKSFKCKICSKCFSRQSDLNQHIIIHTDEKPFKCKICSKGFKKSSHLKMHIRTHTAEKPFKCEICSKCFIKSSDLKRHIRTHTGEKPFRCEICTKCFTEQSNVKRHIVKTHTNEKSFKCN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056911;
- 90% Identity
- iTF_00056911;
- 80% Identity
- iTF_00056911;