Avir000660.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00001051:155422-159540[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0049 0.39 10.9 0.2 26 51 187 212 180 214 0.87 2 10 0.41 32 4.7 0.2 22 44 211 233 206 240 0.89 3 10 1.4 1.1e+02 3.0 1.0 23 46 240 263 234 265 0.83 4 10 0.28 22 5.3 0.2 21 48 266 293 263 297 0.85 5 10 0.0088 0.7 10.1 0.2 21 46 294 319 290 325 0.90 6 10 7.2 5.7e+02 0.7 0.0 22 44 323 345 320 349 0.85 7 10 0.24 19 5.4 0.1 22 47 351 376 338 381 0.79 8 10 0.65 51 4.1 0.1 21 44 378 401 374 405 0.89 9 10 0.0076 0.6 10.3 0.2 21 46 406 431 401 433 0.90 10 10 0.037 2.9 8.1 0.1 21 44 434 457 432 460 0.92
Sequence Information
- Coding Sequence
- ATGGATGGTTTCAAAGAAGCATCAGATTCATTAATAAATAATAAAATCGAAAGTAATCCTAACGAACTGTTATCTAATATTAAAACCGAAGAAATTGAAATTGAAGAATGTAATCTCGAATTCGTGAACTTGCATCAAATTGACTATTATGTGATGGAAAGGGAAACTGAAAATGATGTTTTAATAAGCACAGAAAATATAAAAACTGAAAATGGTAATTCAAATGAGGGTATTCAAGAAAGAAAAAGCGATATCGAAATTAAGAAATACGTTTTCCCTGTTTGTACAAAAGCTATTCATGGTTTTGTTGAAGTAGGACATACTGTGCAAACAATCAAAATGTATTCTAGGAAAAAATGTTTTCTATCTGCGCCGAAAAAGTGGCAACCTCACTTTGGGAAATTTTATGGAACATGTTTCTCTTGTGGACAATTTTTCTGTGATAAATTGCTATTTTTAAACCATTTTTATACATACCACTTGTTAGTTAATTCCAAAAAATGTGTTAACTTAAGAAAGAATAATTCTGATAAAAAACATATTAGACAAATGTTCTTTACATGCGAAATTTGTACCAAATGTTTCACACAATCCAGTGATTTAAAAAGGCATATTAGAATTCACACTGACAAGAAACCTTTTAAATGTAAAATTTGTTTAAAATGTTTTACATACTCCAGTAATTTAAAAGTTCATATTAGAACTCACACTGGTGAAAAACGTTTTAGATGTGAAATTTGTTCAAAATGTTATGTACACAAAAATAACTTAAAAAGGCATATGAGAATTCACACTAACGAGAGACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACAGACCAAAGTTATTTAAAAAGGCATATTAGAATTCACACTGGTGAAAAACCTTACAGATGTGAGATTTGTTCAAAATGTTTCACACAATCAAGTAATTTAAATACGCATGTTAAAATTCACGATGGCGAGAAAGCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACACAAGCCAGTACTTTAAAAGGGCATATTAGAACTCACACTGATGAAAAATCATACAGATGTGAAATTTGTTCAAGATGTTTCACACAATCCGATGATTTAAAAAATCATATTAGAACTCACACTGCAGATAAACCTTTTAAATGTAAAGTTTGTTCGAAATGTTTTAACAATTCCAGTAATTTAAAAATTCATGTTAGAACTCATACTGGTGAGAAACCTTTTAAATGTGAAATTTGTTTAAAATGTTTTACGCAGTCAGTTCATTTAAATAGGCATGTTAAAATTCATACTGGTGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTTACACAAGCCAGTACTTTAAAAAGGCATATTAGAACTCACACTGGTTAA
- Protein Sequence
- MDGFKEASDSLINNKIESNPNELLSNIKTEEIEIEECNLEFVNLHQIDYYVMERETENDVLISTENIKTENGNSNEGIQERKSDIEIKKYVFPVCTKAIHGFVEVGHTVQTIKMYSRKKCFLSAPKKWQPHFGKFYGTCFSCGQFFCDKLLFLNHFYTYHLLVNSKKCVNLRKNNSDKKHIRQMFFTCEICTKCFTQSSDLKRHIRIHTDKKPFKCKICLKCFTYSSNLKVHIRTHTGEKRFRCEICSKCYVHKNNLKRHMRIHTNERPFKCEICSKCFTDQSYLKRHIRIHTGEKPYRCEICSKCFTQSSNLNTHVKIHDGEKAFKCEICSKCFTQASTLKGHIRTHTDEKSYRCEICSRCFTQSDDLKNHIRTHTADKPFKCKVCSKCFNNSSNLKIHVRTHTGEKPFKCEICLKCFTQSVHLNRHVKIHTGEKPFKCEICSKCFTQASTLKRHIRTHTG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056881;
- 90% Identity
- iTF_00056881;
- 80% Identity
- iTF_00056881;