Avir014682.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000071:74536-83934[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.063 5 7.3 0.1 27 51 298 322 295 324 0.86 2 17 0.44 35 4.6 0.1 23 44 322 343 318 347 0.89 3 17 0.0058 0.46 10.6 0.1 21 46 348 373 344 381 0.86 4 17 9.6 7.6e+02 0.3 0.1 21 44 376 399 372 405 0.72 5 17 4.5 3.5e+02 1.4 0.1 22 45 406 429 401 436 0.82 6 17 2.1 1.7e+02 2.4 0.0 21 48 433 460 425 464 0.83 7 17 0.23 18 5.5 0.0 21 51 461 491 459 493 0.86 8 17 0.12 9.9 6.4 0.3 21 48 489 516 487 522 0.88 9 17 0.62 49 4.1 0.1 22 46 519 543 514 549 0.83 10 17 2.9 2.3e+02 2.0 0.0 20 44 545 569 542 578 0.80 11 17 1.1 89 3.3 0.1 21 46 602 627 594 632 0.88 12 17 0.65 52 4.1 0.1 26 52 635 661 629 661 0.85 13 17 0.021 1.6 8.9 0.2 21 52 658 689 654 690 0.90 14 17 0.048 3.8 7.7 0.1 21 52 686 717 682 719 0.87 15 17 1.4 1.1e+02 3.0 0.1 21 52 714 745 711 747 0.86 16 17 2 1.6e+02 2.5 0.2 21 45 742 766 738 773 0.85 17 17 1.1 89 3.3 0.3 20 44 769 793 762 797 0.81
Sequence Information
- Coding Sequence
- ATGGATGTTTTTATAGATGCATCAAACCCAGTAATGAGTAATAAAATCGGAACGGATTCTCAAGATTTATTATCTAATATTAAAACCGAAGAAATTGATATTTTCGAAAAATCTGAATTCGGGAACATGCATCAATTCGACCTTTCTAAGATCAAGACGGAAAGTTGTGAAGAAAAAGTTTCTCAAACTAAAAGTAATGCTGTGTTAAATGTTGATTCAAAAGAGGATATGCAAGAAAGAATAAGTGATATCGAAATTAAAACAGAGAATATGCAGCGTGAATTTGATTTCCCTGTTTGTACAAATGATTATGGTGAAAATCGACAAACAGTAGAAACAGTCAAAATGTATTCTAAGGAAAAGTTACAAGAACAGCCTCACAAGAGTAGAGAACCGAAATTAGAATACGAAAACTCACAATTTATAACAATGGATAATTCTTCAATACATTCTTTCACTATTAAAAGTGAATTATTAATTAGTAGTGAAAATGATAAAAGTGGAATAGATATTTCAAGTCATACTAATCATGAGATCAATCTGGAATTTGACATTAAAAAAGAAGAATTGCAGTTCATTTGCGATTTACCGGATTTCAAAATGGAATTTCAAGATTTTGATAAAGATTTACGTTCAGAGCGACGCATCAAAACATATTCCAAAAACCAGGGTCCAAGTTGTAAAAAGCGTTTTCTGTCTGTGCCGAAAAAGTGGCAACCTCACTTTGGGAAATTTTATGGAATATGTTTCTCTTGTGGACAATTTTTAAGTGATAAATTGCTATTTTTAAACCATTTTTATATATACCACTTTTTAGTTAATTCCAAAAAATCTGTTAACTTCAGAAAGAATAATTCTGATAAAAAACATATTGGACAAATCTTCTTTAAATGCGAAATTTGTACAAAATGTTTCACACAATCCAGTGATTTAAAAAGGCATATTAGAATTCACACTGACAAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTAACATCTTCCAGTAATTTAAAAGATCATATTAGAACTCACACTGGTGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTTACACAATCCAGTAACTTAAAAACTCATATTAGAACTCACACTGACGAGAAACCTTTCAAATGTGAAATTTGTTCAAAATGTTATACAGTAAAAAGTAAATTAAAACAGCATATTGTCAAAGATCACACTGGTGAAAAGTCATGGAAATGTGAAATTTGTTTAAAATGTTACACACAAGAAAGTGATTTAAAACAACACATTAGAACTCATACTGGTGAAAAACCTTTTAAATGTAAAATTTGTCCGAAAGGTTTTCAAAGTTCCAGTTATTTAAAAATGCACATTAGAATTCACACTGGCGAGAAACCTTTTAATTGTAAAATTTGTTCAAAATCTTTCTTAAAATCTAGTGATTTAAAAAAGCATGTTAGAATTCACACTGGTGAAAAACCTTTTAGATGTGAAATTTGTTCAAAATGTTATGTACAAAAAAGTAACTTAAAACAGCATATTATAAGAGATCACATTGGTGAAAAGTCATTGAAATGTGAAATTTGTTCAAAATTTTTCTCACAACAAAGGGATTTAAATCAACACATTAGAACTCATACTAGTGAAAAACCTTTTAAATGTAAAATATGTCCGAAAGGTTTTCAAAGGGCCGGTCATTTAAAAATGCATATCGGAACTCATACTGGCGAGAAACCTTTTAAATGTAAAATTTGTCCGAAAGGTTTTCAAAGTGCCAGTCATTTAAAAATGCATATCAAAACTCACACTGGCGAGAAACCTTTTGAATGTAAAATTTGTTCAAGATGTTTCACAGGACAAAGTAATTTAAAAAATCATATTAGAATTCATACTGGCGAGAAACTTTTTAAATGTGAAATTTGTTCAAAATGTTTTATAGAATCCAGTAAATTAAAAAGGCATATGAGAATTCACAATAACGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTTATAGAATCCAATACATTAAAAAGGCATATGAGAATTCACAATAACGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTTATAGAATCTAGTAAACTAAAAAGGCATATAATAATTCACAATAACGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCAAATCCCAAAGTTATTTAAAAGAGCATATTAGAATTCATACTAACGAGAAACCTTTTAAGTGTGAAATTTGTTTAAAATGTTTTCAAAACCAAAATTATTTAAAACAGCATATTAGAAGTCATACTGGCGAAAAACCTTTTAGGTGTGAAATTTGTTTAAAATGTTTCAAACACCAAAGATATTTTAAAAATCATACTAGAATTCACACTGGTGAAAAATAA
- Protein Sequence
- MDVFIDASNPVMSNKIGTDSQDLLSNIKTEEIDIFEKSEFGNMHQFDLSKIKTESCEEKVSQTKSNAVLNVDSKEDMQERISDIEIKTENMQREFDFPVCTNDYGENRQTVETVKMYSKEKLQEQPHKSREPKLEYENSQFITMDNSSIHSFTIKSELLISSENDKSGIDISSHTNHEINLEFDIKKEELQFICDLPDFKMEFQDFDKDLRSERRIKTYSKNQGPSCKKRFLSVPKKWQPHFGKFYGICFSCGQFLSDKLLFLNHFYIYHFLVNSKKSVNFRKNNSDKKHIGQIFFKCEICTKCFTQSSDLKRHIRIHTDKKPFKCKICSKCLTSSSNLKDHIRTHTGEKPFKCKICSKCFTQSSNLKTHIRTHTDEKPFKCEICSKCYTVKSKLKQHIVKDHTGEKSWKCEICLKCYTQESDLKQHIRTHTGEKPFKCKICPKGFQSSSYLKMHIRIHTGEKPFNCKICSKSFLKSSDLKKHVRIHTGEKPFRCEICSKCYVQKSNLKQHIIRDHIGEKSLKCEICSKFFSQQRDLNQHIRTHTSEKPFKCKICPKGFQRAGHLKMHIGTHTGEKPFKCKICPKGFQSASHLKMHIKTHTGEKPFECKICSRCFTGQSNLKNHIRIHTGEKLFKCEICSKCFIESSKLKRHMRIHNNEKPFKCEICSKCFIESNTLKRHMRIHNNEKPFKCEICSKCFIESSKLKRHIIIHNNEKPFKCKICSKCFKSQSYLKEHIRIHTNEKPFKCEICLKCFQNQNYLKQHIRSHTGEKPFRCEICLKCFKHQRYFKNHTRIHTGEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056799;
- 90% Identity
- iTF_00056799;
- 80% Identity
- iTF_00056799;