Avir005436.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00001998:25609-27990[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.13 10 6.3 0.0 21 52 174 205 169 206 0.88 2 7 0.28 22 5.3 0.0 21 44 202 225 200 229 0.90 3 7 0.18 14 5.9 0.1 21 44 230 253 226 257 0.89 4 7 0.61 48 4.2 0.0 21 44 258 281 253 285 0.88 5 7 0.011 0.86 9.8 0.0 21 48 286 313 282 317 0.86 6 7 0.037 2.9 8.1 0.1 21 46 314 339 311 346 0.87 7 7 0.15 12 6.2 0.1 21 46 342 367 337 374 0.82
Sequence Information
- Coding Sequence
- ATGGATGATTCTTCAATAAATTCTTGTTTCACGTCTAAAAGTGAAATGGTAATTAGAAGTGAAAATAATATTTCAAGTCAAACTAATCAAGAGATCAATATTGAATGTGACATTAAAAAAGAAGAATTGCACTCTGTTTGTGATTTACCGGATTTTAAAATGGAATTTCCAGATTTTGATGAAGAACTAAATTCAGAGCGAAGCATCAAAAGATGTTCAAGAAAAGACAATACAAGTTGTCAAAAGCGTTTTCTATCAGCGGCAAAAAAACCTCACGTTGGAAAATTCTATGGAACATGTTCATCTTGTGGAAAATTCTTCTATGATATATTGCTATTTTTAAACCATTTTCATATTTACCACTTTTTCGTTAATTCGAAAAAATCTGTTAACTTAAGAAGGAATAATTTTGGTACAAAGCATATTAACCGACTAGATCTTAGTAATTTAAACAAAGAGATAGGGGCGGACAATTTCACACAACAAATTAATTTTAAAAAATATATTAAAACCCACATTGCCGAAAAACCTTTTAAATGTAAAATTTGTTCGAAAGATTTCACACGACCCAGTACCTTAAAACGACATATTAGACTTCACACTGACGAGAAACCTTTTAAATGTAAAATTTGTTTGAAATGTTTCAAAGATTCCGGTTATTTAAAAAATCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATTTGTTTGAAATGTTTCAAAAATTCCAGTTATTTAAAAACTCATATTAGAACTCACACTAACGAAAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCACAGATTCCAGTGGATTAAAAAGTCATATTAGAACTCACACTGGTGAGAAACCTTTTAAATGTAAAATATGTTCGACATGTTTCACGCAATCCGGTCATTTAAAATCTCATATTAAAATTCACACTGACGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATCCAGTCACTTAAAAACTCATATTAGAACTCACAGTGACGAGAAACCTTTTAAATATAAAATATGTTCAAAATGTTTCACACAATCAGGTAGTTTAAAAAGACATATTAGAACTCACACTGACAAGAAACCTTTTAAATGTTAA
- Protein Sequence
- MDDSSINSCFTSKSEMVIRSENNISSQTNQEINIECDIKKEELHSVCDLPDFKMEFPDFDEELNSERSIKRCSRKDNTSCQKRFLSAAKKPHVGKFYGTCSSCGKFFYDILLFLNHFHIYHFFVNSKKSVNLRRNNFGTKHINRLDLSNLNKEIGADNFTQQINFKKYIKTHIAEKPFKCKICSKDFTRPSTLKRHIRLHTDEKPFKCKICLKCFKDSGYLKNHIRTHTDEKPFKCKICLKCFKNSSYLKTHIRTHTNEKPFKCKICSKCFTDSSGLKSHIRTHTGEKPFKCKICSTCFTQSGHLKSHIKIHTDEKPFKCKICSKCFTQSSHLKTHIRTHSDEKPFKYKICSKCFTQSGSLKRHIRTHTDKKPFKC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00057038;
- 90% Identity
- iTF_00057038;
- 80% Identity
- iTF_00057038;