Avir000229.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000010:1051039-1055471[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 2.2 1.7e+02 2.4 0.1 25 52 168 195 155 195 0.82 2 6 0.0023 0.18 11.9 0.1 21 46 192 217 188 223 0.87 3 6 0.065 5.1 7.3 0.1 21 47 220 246 216 251 0.86 4 6 0.01 0.8 9.9 0.1 21 48 248 275 244 281 0.85 5 6 0.88 69 3.7 0.0 21 44 304 327 299 332 0.90 6 6 0.067 5.3 7.2 0.0 21 45 332 356 328 360 0.90
Sequence Information
- Coding Sequence
- ATGATAATACTTCTAATACTCGATAAAGTAGAATTGAAATATGCCTTAACCTTAAAAGATTTTTTAGGTTATGTTATAATTTTAATCAACGATTTTGAAAGTGACTACATAGAGATAAAGAATATATATAGTGGACTGTTTTTTGAAAAAACTTTGTTGGCTGAAGAAAAATTCAAAATGGATTTAATCAAAGAAAAACTAGAAGATGTAATTAAAACAGAAGAAATTGAAATTTTCGATGAATTTGATGAGAATAATGGAATAATTATTAAAAAAGAAGAAATAGAAATTGATGAATTAAAAGCCGAATTAAATTGTTTCGATCACATAATTGAAGAACATGAGGTGAATGTTAAATTTGAAATGAAAAAAGAAGAATTAGAATCTACAATAGATTTACCGGATTTTAAAATCGAATTTCAAGATTCTGATGAGGAATTAAATTTAGAGCGAGATTCAACAAAACAGGAACCGAGTTATGAAAATATTGCCGATAAATCTTTTAAATGTAAAATTTGTTCGAAATGTTTCACAAAATCCAGTCATTTAAAAGATCATATTAGAATTCACACTAACGAAAAACCTTTTAAATGTTTATTATGTTCGAAATGTTTCACACAATCATTTAATTTAAAAAGGCACATTAAAACTCACACTGGCGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATTTAATATTTTAAAAAGGCATATTAGAACTCACACTAACGAGAAACCTTTTAAATGTAAATTATGTTCAAAATGTTTCACACAATCCGGTAATTTAAAAAATCATATTAGAACTCACACGAACGAAAAACCTTTTAAATGTGAAAATTGTTCAAAATGTTTCAAATTTTTTAATAGTTTAAAATGTCATATTAAAACTCACACTAATGAGAAACCTTTTAAATGTAAATTATGTTCAAAATCTTTCACAGAATCTGGTATTTTAAAAAGGCATATTAGAACTCACACCAACGAGAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTTACACAATCCGGTAGTTTAAAATATCATATTAAAACTCACACTGGAGAAAAAACCTTTCAGGTGTGA
- Protein Sequence
- MIILLILDKVELKYALTLKDFLGYVIILINDFESDYIEIKNIYSGLFFEKTLLAEEKFKMDLIKEKLEDVIKTEEIEIFDEFDENNGIIIKKEEIEIDELKAELNCFDHIIEEHEVNVKFEMKKEELESTIDLPDFKIEFQDSDEELNLERDSTKQEPSYENIADKSFKCKICSKCFTKSSHLKDHIRIHTNEKPFKCLLCSKCFTQSFNLKRHIKTHTGEKPFKCKICSKCFTQFNILKRHIRTHTNEKPFKCKLCSKCFTQSGNLKNHIRTHTNEKPFKCENCSKCFKFFNSLKCHIKTHTNEKPFKCKLCSKSFTESGILKRHIRTHTNEKPFKCKICSKCFTQSGSLKYHIKTHTGEKTFQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00057111;
- 90% Identity
- iTF_00057111;
- 80% Identity
- iTF_00057111;