Avir015127.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000746:67390-74118[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.28 22 5.3 0.0 21 45 257 281 246 288 0.82 2 10 0.11 8.8 6.5 0.3 22 45 286 309 279 312 0.85 3 10 0.16 12 6.1 0.0 21 46 313 338 309 343 0.91 4 10 2.1 1.7e+02 2.4 0.1 26 48 346 368 339 372 0.82 5 10 1.7 1.4e+02 2.7 0.1 21 44 369 392 355 396 0.81 6 10 0.26 20 5.4 0.1 21 46 397 422 393 428 0.86 7 10 0.078 6.2 7.0 0.0 21 48 425 452 421 456 0.86 8 10 0.29 23 5.2 0.1 21 51 453 483 451 485 0.86 9 10 0.66 52 4.0 0.1 21 44 481 504 477 508 0.91 10 10 0.019 1.5 9.0 0.0 21 45 509 533 505 535 0.91
Sequence Information
- Coding Sequence
- ATGGATATTTCTGTCATTAAACAAGAAGAAATAGAAATTGTTGATGAACCAAAACCCGAATTGCATTGTCTCGATCAGATGGAAACAATTCAAGAAGAGCCCTCTAAAAGTAGTACGTTTAAAAAAGAACCGAAATTCGAATACGAAAACTCGCAACAATTCGTAACACTGGATAATTCTACTAAAAATGAAATGTTAAGCAGTGAAGATGATAAAAGTGAAATAGATATTTCAGGTCAAACTACTCTTGACATGAATCATGAATTTGAGTGTAAAAAAGAACTGTTTCACTCTATTTGCGATTTACCGGATTTTAAAATGGAATTTCAAGATTTTGATGAAGAATTAAATTCAGAGCGAAGCATCAAAAGATATTCGAAGAAACAGGATCCAAATTATAAAAAACGTTTCCAATCAGCGGCAAAAAAATGGCAACCTCACATTGGAAAATTCTATGGAACATGCTCATCTTGTGGAAAAATTTTCTATGATAAATTGTTATTTTTGAACCATTTTTATATTTACCACTTTTTCGCTAATTCGAAAAAATCTGTTAACTTAAAAAGGAATAATTCTGGCACAAAACATATTAACCGACAAAATCTTGGTAATGTAAACAAACAGATAAGGGCGGACAGTTTCACACAACAAAGTGATTTAAAAAAATATATTAAAACACACAAAGGCGAAAAACGTTTTAAATGTGAGATTTGTTCGAAATGTTTCACACAATTCAGTACCTTAAAAACTCATATTAGAACTCACACTGGCGAAAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACACAAATGGGTAATTTAAAAAGTCATGTTAGAACTCATACTGACCAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACACAATCCTGTAATTTAAAAAGTCATATTAAAACTCACACTGGCGAGAAACCTTTTAAATGTAAAATATGTTCGAAATGTTTCACACGATCCGGTTATTTAAAATCTCATATTGAAATTCACACTGACGAGAAACTTTTTAAATGTAAAATTTGTTCGAAATGTTTCAAACATTCCAGTACCTTAAAAAATCATATTAGAATTCACACTGACGAGAAACCTTTTAAATGTGAAATATGTTCGAAAGGTTTCATACGATCCAATAGTTTAAAATCTCATATTACAACTCACTCTGGCGAAAAACCTATTAAATGTAAGATTTGTTCGAAATGTTTCACAAACTCCAGTCATTTAAAATCTCATATTAAAACTCACACTGGCGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACAAAATCCAGTAATTTAAAAACTCATATTAGAATTCACACTGGCGAAAAACCTTTTAAATGTAAGATTTGTTCGAAATGTTTCACAAACTCCAGTCATTTAAAATCTCATATTAGAATTCACACTGGCGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACAGAATCAAGTAAATTAAATAGGCATATTAGAACTCACACTGGCGAGAAACCTTTTAAATGTAAATTATGTTTGAAATGTTTCACACAATCCAGTAACTTAAAAACTCATATCAAAACTCACTGCTGA
- Protein Sequence
- MDISVIKQEEIEIVDEPKPELHCLDQMETIQEEPSKSSTFKKEPKFEYENSQQFVTLDNSTKNEMLSSEDDKSEIDISGQTTLDMNHEFECKKELFHSICDLPDFKMEFQDFDEELNSERSIKRYSKKQDPNYKKRFQSAAKKWQPHIGKFYGTCSSCGKIFYDKLLFLNHFYIYHFFANSKKSVNLKRNNSGTKHINRQNLGNVNKQIRADSFTQQSDLKKYIKTHKGEKRFKCEICSKCFTQFSTLKTHIRTHTGEKPFKCKLCSKCFTQMGNLKSHVRTHTDQKPFKCKLCSKCFTQSCNLKSHIKTHTGEKPFKCKICSKCFTRSGYLKSHIEIHTDEKLFKCKICSKCFKHSSTLKNHIRIHTDEKPFKCEICSKGFIRSNSLKSHITTHSGEKPIKCKICSKCFTNSSHLKSHIKTHTGEKPFKCKLCSKCFTKSSNLKTHIRIHTGEKPFKCKICSKCFTNSSHLKSHIRIHTGEKPFKCKLCSKCFTESSKLNRHIRTHTGEKPFKCKLCLKCFTQSSNLKTHIKTHC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056901;
- 90% Identity
- iTF_00056901;
- 80% Identity
- iTF_00056901;