Avir002507.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00001321:116448-120685[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 2 1.6e+02 2.5 0.1 18 52 221 256 217 256 0.82 2 9 0.0022 0.18 12.0 0.0 21 44 253 276 249 280 0.91 3 9 0.49 39 4.5 0.1 21 50 281 310 277 314 0.85 4 9 6.2 4.9e+02 0.9 0.1 27 44 316 333 312 339 0.90 5 9 3.6 2.8e+02 1.7 0.3 26 52 343 369 334 369 0.78 6 9 0.0069 0.55 10.4 0.1 21 51 366 396 362 399 0.88 7 9 8.3 6.5e+02 0.5 0.1 21 44 394 417 391 421 0.79 8 9 0.001 0.083 13.0 0.0 21 46 422 447 410 453 0.86 9 9 0.64 50 4.1 0.0 21 46 450 475 446 480 0.87
Sequence Information
- Coding Sequence
- ATGAATAGTAAAATTGACCATACATTAATGTCACATCTTACACTTTTGTTTGTTACAACCAGAAAAATGGATGCATCAAACCCAGCAATCAGTAATCAAATCGGAACGGATTCTCCAGGTTTATTATCTAATATTAAAACCGAAGAAATTGATATTATCGAAGAATCTAAACTTGAATTCGAGAACTTGCATCAATTCGATCATTGTATCAAGACGGAAAATTGTGAAAAAAAAGTTTCTCCAACTAAGAGTGATGTGTTTATAAGCAGAGAAAATATAAAAACCGAAAATGTTGGTTCAAAAGAGGATATGCAAGAAAGAATAAGTGATATCGAAATTAAGACAGAAAATATGCAGCCTAAATTTGTCTTCCCTGTTTGTACAAATGATTTTGGTGAAAATCGACAAACAGTACAAACAATCAAAATGTATTCTAGGAAAAACTGTTTCCTATCTGCACAAAAAAACTGGCAAGGTCACTTTGGAAAATTCTATGGAATATGTTCCTTTTGTGGACAGTTTTTCTGTGATAAATTACTATTTTTATACCATTTCTATATTTACCACTTTTTAGTTAATTCTAAAAAATCTGTTAACTTGAGGAGTAATTCTACTACAAAACACATTAACCCAAATCTTTGTGATTTAAACAAACAGATGAGGACTCACAATGAACAAAAATCCTTTAAATGCAAAATTTGTTCAAAATGTTTCACACGATCCGGTCTTTTAAAAAATCATATTAGAATTCACACTCACGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATCTTTTATACAATCCGGTAATTTAAAAAGGCATATTAGTACTCACACTGGTGAAAAACCTTTCAGATGTGAAATTTGTTTAAAATGTTTCACACAAAAAGGTAGCTTAAAAGAGCATACTATTAGAACTCACATCGGTAAAAAGTTATTCAAATGTGAAATTTGTTTAAAATGTTTCACACAACAAAGTGATTTAAAACAACATATTAGAACTCACACTGGTGAAAATCTTTTTAGATGTGAAATTTGTTCAAAATGTTTTGTACGACAAAAGGATTTAAAAAAGCATATTAGAATTCACACTGCCGAAAAACCTTTTATGTGTGACATTTGTTCAAAATGTTTTAGATTCTCCGCTGATTTAAAAAAGCACATTAGAATTCACACTGGTGAGAAACCTTTTAAATGTGAAATTTGTTTAAAATGTTTTACACGATTCGGTGGTTTAAAAAATCATATTAGAATTCACACTGACGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATCTTTTATACAATCCGGTAATTTAAAGAGGCATATTAGAACGCACACTGGTGAAAAACCTTTCAGATGTGAAATTTGTTCAAAATGTTTCACAGAAAAAGGTAACTTAAAAGAGCATATTACTAATATTCACGGTGAAAAGCTATTGAAATGTAAAAATTGTTCAATATATTTCACACGAAAACGTGGCTTAAAAGACCCATTCAAATGTGAAAATTGCTCAAAATGTTTCCCACAACAAAGCGATTTAAATCAGCCTATTAGAATAGAATTTGTTCAAAATGTTTTATTCTAA
- Protein Sequence
- MNSKIDHTLMSHLTLLFVTTRKMDASNPAISNQIGTDSPGLLSNIKTEEIDIIEESKLEFENLHQFDHCIKTENCEKKVSPTKSDVFISRENIKTENVGSKEDMQERISDIEIKTENMQPKFVFPVCTNDFGENRQTVQTIKMYSRKNCFLSAQKNWQGHFGKFYGICSFCGQFFCDKLLFLYHFYIYHFLVNSKKSVNLRSNSTTKHINPNLCDLNKQMRTHNEQKSFKCKICSKCFTRSGLLKNHIRIHTHEKPFKCEICSKSFIQSGNLKRHISTHTGEKPFRCEICLKCFTQKGSLKEHTIRTHIGKKLFKCEICLKCFTQQSDLKQHIRTHTGENLFRCEICSKCFVRQKDLKKHIRIHTAEKPFMCDICSKCFRFSADLKKHIRIHTGEKPFKCEICLKCFTRFGGLKNHIRIHTDEKPFKCEICSKSFIQSGNLKRHIRTHTGEKPFRCEICSKCFTEKGNLKEHITNIHGEKLLKCKNCSIYFTRKRGLKDPFKCENCSKCFPQQSDLNQPIRIEFVQNVLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056929;
- 90% Identity
- iTF_00056929;
- 80% Identity
- iTF_00056929;