Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00000187:675586-681178[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.044 3.5 7.8 0.0 26 51 195 220 190 222 0.86

2 11 2.9 2.3e+02 2.0 0.3 22 49 219 246 214 251 0.85

3 11 0.0069 0.54 10.4 0.1 21 46 247 272 241 277 0.90

4 11 2.4 1.9e+02 2.2 0.1 26 46 280 300 274 307 0.85

5 11 2.8 2.2e+02 2.0 0.0 20 44 331 355 323 359 0.89

6 11 0.14 11 6.2 0.2 20 51 359 390 355 393 0.86

7 11 0.028 2.2 8.5 0.3 18 48 412 443 404 448 0.82

8 11 4.8 3.8e+02 1.3 0.0 19 46 471 498 460 504 0.79

9 11 0.33 26 5.0 0.0 21 44 501 524 497 528 0.91

10 11 0.0019 0.15 12.2 0.2 21 48 529 556 525 560 0.84

11 11 0.039 3.1 8.0 0.2 21 45 557 581 553 589 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.044	3.5	7.8	0.0	26	51	195	220	190	222	0.86
2	11	2.9	2.3e+02	2.0	0.3	22	49	219	246	214	251	0.85
3	11	0.0069	0.54	10.4	0.1	21	46	247	272	241	277	0.90
4	11	2.4	1.9e+02	2.2	0.1	26	46	280	300	274	307	0.85
5	11	2.8	2.2e+02	2.0	0.0	20	44	331	355	323	359	0.89
6	11	0.14	11	6.2	0.2	20	51	359	390	355	393	0.86
7	11	0.028	2.2	8.5	0.3	18	48	412	443	404	448	0.82
8	11	4.8	3.8e+02	1.3	0.0	19	46	471	498	460	504	0.79
9	11	0.33	26	5.0	0.0	21	44	501	524	497	528	0.91
10	11	0.0019	0.15	12.2	0.2	21	48	529	556	525	560	0.84
11	11	0.039	3.1	8.0	0.2	21	45	557	581	553	589	0.88

Sequence Information

Coding Sequence: ATGGATGGTTTCAAAGAAGAATCAGATTCATTAATGAATAATGAAATCGAAAATAATCCTAAAGAACTGTTATCTAATATTAAAACCGAAGTAATTGAAATTGAAGAATGTAAACTCGAATTCGATAACTTGCATCAAATTGACTTTTATATGATGAAAAGGGAAAATTCTGAAGAAAAAGTTTCTCCAACTAAAAGTGATGTTTTAATAAGCACAGAAAATATAAAAACTGAAAAAGTTAATTCAAATGAGGGTATTCAAGAAAAAAAAAGTGATATCGAAATTAAGAAATATGATTTCCCTGTTTGTACAAAAGCTATCCATGATTTTGTTGAAGTAGGGCAAACTGTGCAAACAATAAAAAAGTATTCTAGGAAAAAATGTTTTCTGTCTGTGCCGAAAAAGTGGCAACCTCATTTTGGGAAATTTTATGGAACATGTTTCTCTTGTGGACAATTTTTCTGTGATAAATTGCTGTTTTTAAACCATTGTTATATATACCACTTTTTAGTTAATTCCAAAAAATCTGTTAACTTAAGAAGGAATAATTCTGATAAAAAACATATTGGACAGATGTTCTTTAAATGCAAAATTTGTACAAAATTTTTCACACAATCCAGTGATTTAAAAAGACATATTAGAATTCACACTGACAAGAAACCTTTTAGATGTGAAATTTGTTCAAAATGTTATGTAAAAAAAATTAACTTAAAACAGCATATTGTTAGAGATCATATTAGTGAAAAGTCATTGAAATGCGAAATTTGTACAAAATGTTTCACACAATCCAGTGATTTAAAAAGGCATATTAAAATTCACACTGACAAGAAACTTTTTAAATGTAATATTTGTTTAAAATGTTTTACATATTCCTCTAATTTAAAAGTTCATATTAGAACTCACACTGGTGAGAAACCTTTCAAATGTGAAATTTGTTCAAAATGTTATACACTAAAAAGTATTTTAAAAAAGCATATTGTTAGAGTTCACACTAGTGAAAAATCATGGAAATGTGAAATTTGTTCAAAATGGTTTACACAAAAAAGTGATTTAAAACATCATATTAGAACTCATGCTAGTGAAAAACCTTTTGAATGTAAAATTTGTTCGAAACGTTTTCAAAGTTCCAGTCATTTAAAAATGCACATTAGAATTCACACTGGCGAGAAACCTTTTAAATGTAAATTTTGTTCAAGATGTTTTATAGGAGCCACAGAATTAAAAATGCATATTAGAAGTCACACAGGTGAAAAACCTTTTAGATGTGAAATTTGTGCAAAATATTATGTACACAAAAGAAACTTAAAACAGCATATTGTTAGAGATCACATTGGTGAAAAGTCATTGAAATGTGAAATGTGTTCAAAATGTTTCTCACAGCAAACGGATTTAAATCAACACATTAGTACTCATACTGGTGAAAAACCTTTTAAATGTAAAATTTGTCCGAAAAGTTTTCAAAGAACCGGTCATTTAAATATGCATATTAGAATTCACACTGGTGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCTTAAAATCTAGTGATTTAAAAAAGCATATTAGAAGTCACGCTGGTGAAAAACCTTTTAATTGTCATATTTGTTCAAAATGTTTCACACAATCTAGTAATTTAAAAATGCATATTAGAATTCACACTGGCGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACACAAAACAGTACTTTAAAAAGGCATATTAAAAAAAGCTCACACTGGCGAAAAAGCTTACAGAAATGA
Protein Sequence: MDGFKEESDSLMNNEIENNPKELLSNIKTEVIEIEECKLEFDNLHQIDFYMMKRENSEEKVSPTKSDVLISTENIKTEKVNSNEGIQEKKSDIEIKKYDFPVCTKAIHDFVEVGQTVQTIKKYSRKKCFLSVPKKWQPHFGKFYGTCFSCGQFFCDKLLFLNHCYIYHFLVNSKKSVNLRRNNSDKKHIGQMFFKCKICTKFFTQSSDLKRHIRIHTDKKPFRCEICSKCYVKKINLKQHIVRDHISEKSLKCEICTKCFTQSSDLKRHIKIHTDKKLFKCNICLKCFTYSSNLKVHIRTHTGEKPFKCEICSKCYTLKSILKKHIVRVHTSEKSWKCEICSKWFTQKSDLKHHIRTHASEKPFECKICSKRFQSSSHLKMHIRIHTGEKPFKCKFCSRCFIGATELKMHIRSHTGEKPFRCEICAKYYVHKRNLKQHIVRDHIGEKSLKCEMCSKCFSQQTDLNQHISTHTGEKPFKCKICPKSFQRTGHLNMHIRIHTGEKPFKCEICSKCFLKSSDLKKHIRSHAGEKPFNCHICSKCFTQSSNLKMHIRIHTGEKPFKCEICSKCFTQNSTLKRHIKKSSHWRKSLQK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00056864;
90% Identity: iTF_00056864;
80% Identity: iTF_00056864;