Avir009304.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000035:1709634-1717126[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 2.8 2.2e+02 2.0 0.1 26 52 220 246 213 246 0.80 2 8 0.0022 0.17 12.0 0.0 21 46 243 268 240 273 0.86 3 8 0.0062 0.49 10.5 0.2 21 46 270 295 267 301 0.87 4 8 2.4 1.9e+02 2.2 0.2 21 44 298 321 294 325 0.87 5 8 0.014 1.1 9.4 0.0 21 46 326 351 322 357 0.86 6 8 0.41 32 4.7 0.2 21 52 354 385 350 385 0.87 7 8 0.02 1.6 8.9 0.1 21 46 382 407 378 413 0.90 8 8 1.2 97 3.2 0.1 22 41 411 430 408 432 0.86
Sequence Information
- Coding Sequence
- ATGGATGGTAACAAAGAAGCATCAAATCCATTAATGAATAATGAAATCGAAAGTAATCCTAAAGAATTGTTATCTAATATCAAAACCGAAGAAATTGAAATGGAAGAATGTAAACTCAAATTTGAGAATTTTTATGTGATGAAAAGGGAATGTCCTGTAGAAAAAGTTTCTTCAACTAAAAGCGATGTTGTGTTAATAAGCAAAGAAAATATAAAAACTGAAAATGTTGATCCAAATGAGGATATTGAAGAAAGAAAATGTGATATCGAAATTAAAACAGAAGCTACATTTGATTTTCCTGCAAATACTATCCATGATTTTGTTGAAAATCGACAAACAGAGCAAACAATCAAAATGTATCCTAGGAAAAAAAGTTTCCTATCTGCGGCAACAAAATTGCATCATCATTTTGGGAAATTCAATGGAACATGTTCGTATTGTGGCCATTTTTTTTGTGATAATTTGTTATTTTTACATCATTTTAGTATTTACCACTTTATAGTTAAATTTAAAAAATCTGTTGATTGGAGAATGAATAATTCTGCTACTAAACATATTGGACAAATATCCTTTAAATGCGAAATTTGTTCAAAATACTTCAAAGATCAAAATTATTTAAATCAGCATATTATACTTCACACTGGTGAAAAATTGTTCAAATGTGAATATTGTTCGAAACGTTACACAAAATCTAAGCGTTTAAAAAGGCATGTTAAAATTCACACTAACGAGAAACCTTTTAAATGTGATATTTGTTCAAAATGGTTCCGAAGATCTGATGATTTGAAAAGGCATATTATGATTCACACTGAAAAACCGTTCAGATGTGAAATTTGTTCAAAATGTTTTACACAATCCATTAACTTAAAAACTCATATTAGAACTCACACTGGTGAAAAACCTTTTAGATGTGAAATTTGTTCAAAATGTTTCACATCTTCCAGTTATTTAAAAGTTCATATTAGAACTCACACTGGTGAGAAACCTTATAAATGTGAAATATGTTCGAAATGTTTCACACAATCCGGTGATTTAAAAAAGCATATTAGAACTCACACTGGCGAAAAACCTTTTAGATGTAAAATTTGTTCAAAATGTTTTACAGAATTCAGTATATTAAAAAGGCATATGAGAATTCACAATAACGAGAAACCTTTTAAATGTAAATTTTGTTCAAAATGTTTCACACAATCAAGTAATTTAAATAAGCATGTTAGAATTCATACTGGTGAGAAAGCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACACAATCTAGTAATTTAAAACATTCATGTTAA
- Protein Sequence
- MDGNKEASNPLMNNEIESNPKELLSNIKTEEIEMEECKLKFENFYVMKRECPVEKVSSTKSDVVLISKENIKTENVDPNEDIEERKCDIEIKTEATFDFPANTIHDFVENRQTEQTIKMYPRKKSFLSAATKLHHHFGKFNGTCSYCGHFFCDNLLFLHHFSIYHFIVKFKKSVDWRMNNSATKHIGQISFKCEICSKYFKDQNYLNQHIILHTGEKLFKCEYCSKRYTKSKRLKRHVKIHTNEKPFKCDICSKWFRRSDDLKRHIMIHTEKPFRCEICSKCFTQSINLKTHIRTHTGEKPFRCEICSKCFTSSSYLKVHIRTHTGEKPYKCEICSKCFTQSGDLKKHIRTHTGEKPFRCKICSKCFTEFSILKRHMRIHNNEKPFKCKFCSKCFTQSSNLNKHVRIHTGEKAFKCEICSKCFTQSSNLKHSC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056992;
- 90% Identity
- iTF_00056992;
- 80% Identity
- iTF_00056992;