Avir016632.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000895:417963-433168[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.051 4 7.6 0.2 22 48 217 243 212 247 0.83 2 8 0.26 21 5.3 0.1 21 48 244 271 240 275 0.86 3 8 0.35 28 4.9 0.1 21 46 272 297 268 303 0.87 4 8 1.8 1.4e+02 2.6 0.2 21 45 300 324 296 327 0.89 5 8 0.39 31 4.8 0.0 21 46 328 353 324 359 0.86 6 8 0.96 76 3.5 0.0 21 45 356 380 353 383 0.89 7 8 8.4e-05 0.0066 16.5 0.2 21 51 384 414 380 417 0.87 8 8 0.083 6.6 6.9 0.1 22 45 441 464 433 469 0.88
Sequence Information
- Coding Sequence
- ATGCTTCAAAACTTAATCTCTAACCTTACAACGAATAACATTGATATGAATGCTTACTCCTCAAGATACACATCACGGTTTTCCGTTCAAGAAGAGCCCTATAAAAATAGTATGTTTAAAAAAGAACCGAAATTCGAATACGAAAATTTTCAACAATTCGTAACCATGGATGATTCTTCAATAAATTCTGTCACTATTAAAAGTGAAAATGATATTTCTAGTCAAACTAATCATGAGATCAATATTAAATTTGACATTAAAAAAGAAGATTTGCACTCTGTTTGTGATTTAGCGGATTTTAAAATGGAATTTCCAAATTTTGATGAGGAATTAAATTTAGAGCGAAGCATCAAAAGATATTCGAGGGAACAGAATCCAAGTTGTAAAAAGCGTTTTCTATCAGCGGCAAAAAAATGGCAACCTCACTTTGGAAAATTCTATGGAACATGCTCATCTTGTGGAAAATTTTTCTATGATAAATTGCTATTTTTAAAGCATTTTTATATTTACCACTTTTCCGTTAATTCGAAAAATTGTGGCACAAAGCATTTTAACCGACAAGATCTTACTAATTTAAACAAACAGATAAGGGCGGACTGTTTCAGACAAAAAAGTTATTTAAAAAAATATATTAAAACCCACAATGGCGAAAAACGTTTTAAATGTAAGATTTGTTCGAAATGTTTCACACAATCCAGTAATTTAAAAATTCATATTAGAATTCACACTGGCGAAAAACCTTTTAAATGTAAGATTTGTTCGAAATGTTTCACAAACTCCAGTCATTTAAAATCTCATATTAGAATTCACACTGGCGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACAGAATCAAGTAAATTAAATAGGCATATTAGAACTCACACTGGCGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCATACAATCCAGTCATTTAAATTGTCATATTAAAACTCACACTGGCGAGAAACCTTTTAAATGTAAAATTTGTTTAAAATGTTTCACAGAATCCGGTCATTTAAAAAGTCATATTAAAACTCACACTGGCGAGAAACCTTTTAAATGTAAAATTTGTTTAAAATGTTTCACAGGATCCAGTCATTTAAAAAGTCATATTAAAACTCACACTGGCGAAAAACCTTTTAAATGTAAAATTTGTTTGAAATGTTTCACACAATCCAGTAATTTAAAAAGACATATTAGAATTCACACTGACGAGAAACCATTTAAATGTAAGTTTTGTTCAAAATGTTTCACCGATTCCAGTAGTTTAATATTGCATAATAGAACTCACACTGATGATAAACCTTTTAAATGTAAAATATGTTCGAAATGTTTCACACAATCAGGCAGTTTAAAAAAACATATTAGAACTCACACTCGTGAAAAACACTGA
- Protein Sequence
- MLQNLISNLTTNNIDMNAYSSRYTSRFSVQEEPYKNSMFKKEPKFEYENFQQFVTMDDSSINSVTIKSENDISSQTNHEINIKFDIKKEDLHSVCDLADFKMEFPNFDEELNLERSIKRYSREQNPSCKKRFLSAAKKWQPHFGKFYGTCSSCGKFFYDKLLFLKHFYIYHFSVNSKNCGTKHFNRQDLTNLNKQIRADCFRQKSYLKKYIKTHNGEKRFKCKICSKCFTQSSNLKIHIRIHTGEKPFKCKICSKCFTNSSHLKSHIRIHTGEKPFKCKLCSKCFTESSKLNRHIRTHTGEKPFKCKLCSKCFIQSSHLNCHIKTHTGEKPFKCKICLKCFTESGHLKSHIKTHTGEKPFKCKICLKCFTGSSHLKSHIKTHTGEKPFKCKICLKCFTQSSNLKRHIRIHTDEKPFKCKFCSKCFTDSSSLILHNRTHTDDKPFKCKICSKCFTQSGSLKKHIRTHTREKH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056986;
- 90% Identity
- iTF_00056986;
- 80% Identity
- iTF_00056986;