Avir004804.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00001828:1112-6787[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.5 2.8e+02 1.7 0.1 26 45 13 32 7 39 0.86 2 12 0.11 8.4 6.6 0.2 21 46 36 61 27 68 0.82 3 12 0.15 12 6.1 0.1 22 47 93 118 79 124 0.79 4 12 9.6 7.6e+02 0.3 0.1 21 42 120 141 116 149 0.70 5 12 0.00053 0.042 14.0 0.3 21 51 149 179 140 180 0.87 6 12 0.58 46 4.2 0.1 21 46 177 202 175 207 0.87 7 12 1.9 1.5e+02 2.6 0.1 25 46 209 230 202 233 0.86 8 12 0.29 23 5.2 0.0 22 45 234 257 231 263 0.90 9 12 5 3.9e+02 1.2 0.1 26 45 266 285 259 288 0.87 10 12 0.013 1 9.5 0.1 21 46 289 314 285 320 0.87 11 12 0.41 32 4.7 0.0 21 45 317 341 313 348 0.86 12 12 0.36 28 4.9 0.0 21 44 345 368 340 372 0.90
Sequence Information
- Coding Sequence
- ATGGGAACTCACATTGAAAAAAAATCCACAATAATAAGTTGTAAAATTTGTTTAAAACGTTTTACACAACAATTTAGTTTAAAAAGACATACTAGAACCCACACTGGCGACAAACCGTTTAAATGTAATATTTGTTCAAAATGTTTCACACAATCCGGCCATTTAAAAAGCCATATTAGAACTCACACTGGTGAAAAACCTTTCAGATGTGAAATTTGTTCAAAATGTTTCCCATTTCCAAATAAGTTAAAAGATCATACTAGAATTCACTCTGGTGAGAAACTTTTTAAATGTAAAATTTGTTCGAAATGTTTTAATGATTCCAGTCAATTAAAAAGGCATATAAAAACTCACACTGGCGAAAAACCTTTCAGATGCGAAATTTGTTCAAAATGTTTCACACGAAAAGGTGGCTTAAAAGAACATAATATTAGAACTCACATCGGTGAAAAGCCATTCAAATGTGAAATTTGTCTAAAATGTTTCCCACAACAAAGAGATTTAAAAAGGCATATTCAAATTCACACTGGCGAGAAACCTTTTGAATGTAAAATCTGTTTAAAACGTTTCATACAATCCAGTCATTTAGAATTGCATATTCGAATCCACACTAACGAAAAACTTTTTAAATGTGAAATTTGTTCTAAACGTTTCATACAATCCGGTCATTTAAAAAAGCATATTCGAATTCACACTGACGAAATACCTTTTAAATGTAAAATTTGTTCAAAAGGTTTTAAAGAATCCGATAAGTTAAACAGACATATTAGAACTCACACTGATGACAAATCTTTCAAATGTGAAATTTGTTCGAAATGTTTTAAAAATTCCAGTCATTTAAAAATGCATATTAAAACTCACACTGATGAAAAACCTTTCAGATGTGAAATTTGTTCAAAATGTTTTAGAAGTTCCAGTCATTTAAAAAAGCATATTAAAACTCACACTGGGGAAAAACCTTTCAGATGTGAAATTTGTTCAAAATGTTTTATAGGCTCCAGTGATTTAAAAAAGCATATTAGAACTCACACTGGTGAAAAACCTTTCAGATGTGAAATTTGTTTAAAATGTTTTACAGACTCCGGATATTTAAAAAAGCATATTAGAACACATACTGGTGAAAAAACTTTTCAAATGTCAAATTTGTTCAAAATGTTTCATAATATCCTCTCATTTAAAAAAGCATATTAG
- Protein Sequence
- MGTHIEKKSTIISCKICLKRFTQQFSLKRHTRTHTGDKPFKCNICSKCFTQSGHLKSHIRTHTGEKPFRCEICSKCFPFPNKLKDHTRIHSGEKLFKCKICSKCFNDSSQLKRHIKTHTGEKPFRCEICSKCFTRKGGLKEHNIRTHIGEKPFKCEICLKCFPQQRDLKRHIQIHTGEKPFECKICLKRFIQSSHLELHIRIHTNEKLFKCEICSKRFIQSGHLKKHIRIHTDEIPFKCKICSKGFKESDKLNRHIRTHTDDKSFKCEICSKCFKNSSHLKMHIKTHTDEKPFRCEICSKCFRSSSHLKKHIKTHTGEKPFRCEICSKCFIGSSDLKKHIRTHTGEKPFRCEICLKCFTDSGYLKKHIRTHTGEKTFQMSNLFKMFHNILSFKKAY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056834;
- 90% Identity
- iTF_00056834;
- 80% Identity
- iTF_00056834;