Avir014002.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000659:272079-275218[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.00054 0.043 13.9 0.2 17 52 197 233 191 233 0.86 2 7 0.0024 0.19 11.9 0.8 21 46 230 255 227 261 0.90 3 7 0.0078 0.62 10.2 0.0 18 45 281 309 274 316 0.82 4 7 0.49 39 4.5 0.0 21 44 313 336 309 343 0.87 5 7 0.13 10 6.3 0.3 21 48 370 397 361 401 0.85 6 7 0.55 44 4.3 0.0 21 45 398 422 396 429 0.86 7 7 1 81 3.4 0.0 21 46 426 451 422 458 0.86
Sequence Information
- Coding Sequence
- ATGGATGTTTTCAAAGATGCATCAACATTGTTGAGTAATAAAATCGGAACAAATTCTAAAGAATTATTATCTAATATTAAAACCGAAGAAATTGAAATCAAAGAACGTAAACTCGAATTCGACAACTTGCATCAAATTGACTTTTATATGACGAAAAGGGAAAGTTCTGTAGAAAAAGTTTTTCCAACTAAAAGTGATGTGTTTGTAAGTAGAGAAAATATAAAAACCGTAAATGTTGATTCAAACGAGGATATGCAAGAAAGAAAAAGTGATATCAAAATTAAGAAAGAATATATCTCTGTTAGTAGAAATGATTTTGGTGAAAATCGACACACAGTACAAACAATCAAAAAGTATTCTAGGAAAAAATGTTTCCTATCTGCGCCAAAAAACTTGCAAGCTCACTTTGGAAAATTCTGTGGAACATGTTCCTCTTGTGGACAATTTCGCTATGATAAATTGCTATTTTTGAACCATTTTTATGTTTACCACTTTTTAGGTAATGCTAAAAGATCTATTTATTTGAGAAGGAATAATTCTGCTACAAAACACATTAACCTAGAAGAGCTTGGTAATTTAAACGAACAGATAAGATCTCACAGTGAACAAAAACCCTTTAAATGCGAAATTTGTTCAAAATGTTTCGGACTGTCCCGCCAATTAAAAAAGCATATTAAAATTCATACTAGCGAAAAACCTTTCAGGTGTAAAATTTGTTTAAAATGTTTTCAACAACAGAGGTATTTAAAACAGCATATGAGAATTCACAATGACAAGAAATCTATTAAATGTACAAAACACTTTAACCTAGAAGATCTTGGTAATTTGAACGAAGAGATGAGATATCACAGTGAACAAAAATATTTTAAATGCGAAATTTGTTCAAAATTATTTACAAATTCCGCTAATTTAAAAAGGCATATTAAATCTCACACTGGTGAAAAACCTTTCATTTGTGAAATTTGTTTAAAATGTTTCACACAAAAAGGTAGCTTAAAAGAGCATATTATTAGAATTCACACTGTTGAAAAGTTATTTAAATGTGAAAATTGTTCAAAATGTTTCCCACGAGAAAGTGATTTAAAACAGCATACTAGAATTCATACTGACGAAAAACCTTTTAAGTGTGAAATGTGTTCAAAATGTTACAAACACTCCAGTCAGTTAAGAATGCACATTAGAATTCACACTGACGAGAAACCTTATAAATGTGATATTTGTTCAAGATGTTTCATTGCATCTGGTGATTTAAAAAAGCACATTAGAACTCACACTGGTGAAAAACCTTTCAGATGTGAAATTTGTTTAAAAGATTTCGCACAAAAAGGTAGCTTAAAACAGCATATTATCAGAGCTCATACTGTTGAAAAGTCATTTAAATGTGAAATTTGTTTTAAAATTTTTTAG
- Protein Sequence
- MDVFKDASTLLSNKIGTNSKELLSNIKTEEIEIKERKLEFDNLHQIDFYMTKRESSVEKVFPTKSDVFVSRENIKTVNVDSNEDMQERKSDIKIKKEYISVSRNDFGENRHTVQTIKKYSRKKCFLSAPKNLQAHFGKFCGTCSSCGQFRYDKLLFLNHFYVYHFLGNAKRSIYLRRNNSATKHINLEELGNLNEQIRSHSEQKPFKCEICSKCFGLSRQLKKHIKIHTSEKPFRCKICLKCFQQQRYLKQHMRIHNDKKSIKCTKHFNLEDLGNLNEEMRYHSEQKYFKCEICSKLFTNSANLKRHIKSHTGEKPFICEICLKCFTQKGSLKEHIIRIHTVEKLFKCENCSKCFPRESDLKQHTRIHTDEKPFKCEMCSKCYKHSSQLRMHIRIHTDEKPYKCDICSRCFIASGDLKKHIRTHTGEKPFRCEICLKDFAQKGSLKQHIIRAHTVEKSFKCEICFKIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00057068;
- 90% Identity
- iTF_00057068;
- 80% Identity
- iTF_00057068;