Avir015312.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000759:206096-211633[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.15 12 6.1 0.0 21 44 220 243 212 247 0.89 2 8 0.058 4.6 7.4 0.1 21 46 248 273 244 280 0.84 3 8 2.1 1.6e+02 2.5 0.1 21 44 276 299 272 303 0.89 4 8 0.00061 0.048 13.8 0.1 21 44 304 327 299 331 0.91 5 8 1.1 85 3.4 0.2 22 45 333 356 328 359 0.83 6 8 0.016 1.3 9.2 0.1 21 48 360 387 356 391 0.86 7 8 0.074 5.9 7.1 0.1 21 46 388 413 384 419 0.86 8 8 1.8 1.4e+02 2.7 0.1 22 44 417 439 412 442 0.85
Sequence Information
- Coding Sequence
- ATGTTTAAGAGAGAACCGAAATTCGATTATGAAAACTCGCAAGAATTCGTAACAATGGATAATTCGTCAACACATTCTTTCACTACTAAAAGTGAAATTTTAATTAGTAGTGAAAATAATATTTCAAGTCAAACTAATTATGAGATCAATCTTGAATTAGACATTAAAAAAGAATTGCACTCCATTTGCGATTTACCAGTTTTTAATAAGGAATTTCAGGATTTTGATGAAGAATTACGTCCAGAGCGACGCATCAAAACATATTCCAGGAAACAGGGCCCATGTTATAAAAAACGTTTCCTATCTCCGGCAGAAAAATGGCAAACTCACTTTGAAAAATTCTATCGAACATGTTGCTCTTGTGGAAAATTTTTCTATGATAAATTGCTATTTTTAAACCATATTTATATTTACCACTTTTTCATTAATTCTAAAAAATCTGTTAACTTAAAAAGGAATAATTCTGCCACAAAACATATTAATCGACAAGATCTTAGTAACTTAAACGAACAGATGAAGACTCACAGTTTTACACAACAAAGTAATTTAAAAAAACATACTAAAACCCACACTGACGAAAAACTTTTTAAATGTAATATCTGTTCGAAATGTTTCCCACACTCCTGGCATTTAAAAACCCATTTTAGAACTCACACTGGTGAAAAACCTTTCAGATGTGAAATTTGTTCCAAAAGTTTCACACAATCGTGGCATTTAAAAACTCATATTAGAACTCACACTGGTGAAAAACCTTTCACATGTGAAATTTGTTCAAAAAGTTTCACAATTCAAGCTGATTTAAGAAAACATATTAGAACGCACACTGGCGAAAAACCTTATAAATGTAAAAATTGTTCGAAATGTTTTACAAATTCCAGTAATTTAAAAATTCATATTAGAACTCACACTGACGAGAAACCGCATAAATGTAAAATTTGTTCGAAATCTTTTACTCAATCCGGTAATTTAAAAAGGCATATTAGAAGTCACACTGACGAGAAATTTTTTAAATGTAAGATTTGTTCGAGATGTTTCACACAATCCAGTCATTTAAAAACTCATATCAAAACTCACACTGACGAGAAACCTTTTAAATGTAAAATATGTTCGAAATGTTTCACACGTTCCAGTAACTTAAAAACTCATATTAGAATTCACACTGACGAAAAACCTTTTAAATGTGAAATTTGTTCGAAATATTTCACACAATCTAGTCATTTAAAAACTCATATTAGAACTCACACTGACCAGAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCACAAATTCCAGTCATTTAAAAACTCATATTAAAACTCACCCTAACGAAAACCTTTTAAATGAAAAATTTGTTTGA
- Protein Sequence
- MFKREPKFDYENSQEFVTMDNSSTHSFTTKSEILISSENNISSQTNYEINLELDIKKELHSICDLPVFNKEFQDFDEELRPERRIKTYSRKQGPCYKKRFLSPAEKWQTHFEKFYRTCCSCGKFFYDKLLFLNHIYIYHFFINSKKSVNLKRNNSATKHINRQDLSNLNEQMKTHSFTQQSNLKKHTKTHTDEKLFKCNICSKCFPHSWHLKTHFRTHTGEKPFRCEICSKSFTQSWHLKTHIRTHTGEKPFTCEICSKSFTIQADLRKHIRTHTGEKPYKCKNCSKCFTNSSNLKIHIRTHTDEKPHKCKICSKSFTQSGNLKRHIRSHTDEKFFKCKICSRCFTQSSHLKTHIKTHTDEKPFKCKICSKCFTRSSNLKTHIRIHTDEKPFKCEICSKYFTQSSHLKTHIRTHTDQKPFKCKICSKCFTNSSHLKTHIKTHPNENLLNEKFV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056918;
- 90% Identity
- iTF_00056918;
- 80% Identity
- iTF_00056918;