Avir001897.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000124:67712-72889[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0026 0.2 11.8 0.2 26 45 233 252 230 254 0.92 2 10 0.25 20 5.4 0.1 18 46 253 281 252 286 0.88 3 10 0.058 4.6 7.4 0.3 24 46 287 309 280 315 0.82 4 10 0.15 12 6.1 0.1 21 52 312 343 308 343 0.86 5 10 0.00022 0.017 15.2 0.5 21 48 340 367 337 371 0.86 6 10 0.19 15 5.8 0.2 22 44 369 391 366 398 0.90 7 10 3.3 2.6e+02 1.8 0.1 23 45 426 448 416 454 0.83 8 10 0.19 15 5.7 0.3 25 52 456 483 447 483 0.84 9 10 0.058 4.6 7.4 0.1 21 48 480 507 476 511 0.86 10 10 5.1 4.1e+02 1.2 0.1 22 46 509 533 504 537 0.88
Sequence Information
- Coding Sequence
- ATGGATGTTTTTAAAGATGCATCAAACCCAGTAATGAGTAATAAAATCGGAACGGATTCTCAATATTTATTGTCTAATATTAAAACAGAAGAAATGGATATTTTAGAAGAATCTAAACTTGAATTCGAGAACCTACATCGATTCGACCTTTGTAAGATCAAGACGGAAAGTTGTGAAGAAAAAGTTTCTCCAACTAAAAGTAATGTTGTGCTAAATGTTGATTCAAAAGAGGATATGCAAGAAAGAATAAGTGATATCAAAATTAAGACAGAAAATTTGCTGAGTGAATTTAATTTCCCTGTTTGTAGAAATGATTTTGGTGAAAATCGACAAACAGTAGAAACAATCAAAATGTATTCTAAGGAAAAATGTTTCCTATCTGCACCAAAAAAAGGGCAACCTCACATTGGAAAATTCTTTGAAACATGTACCTCTTGTGGACAATTTTTCTCTGATAAATTGCTATTTTTAAACCATTTCTATATTTATCACTTTTTAGTTAATTCTAAAAAATGTGTTAACTTGAGAAGAAATAATTCTGCTACAAAACAAATTAACCTAGAAAATCTTAGTTATTTAAATGAACAGATTAAGACTAATAGTGGACAAAAATCCTTTAAAAGTGAACATTGGTCAAAATGTTTGAAGCGAAATAGTGTCTTAAATCAACTTATTAGAATTCACACTGGTGATGTAAAATGTAAAATGTGTTATAAATTTTATACAAGTTCTAGAAATTTAAAAAGGCATATTAATAGAAACATTGGTGAAAAACCTTTCACTTGTAAATTTTGTTCAAAATGTTTCATAGCATCCTGTGCTTTAAAAAAACATATGAGAATTCACTCTAACGAGAAACTTTTTAAATGTGAAATTTGTACAAAATGTTTTATAGAATCCAGAGATTTAAAAAGGCATATTAGAACTCACACTGGTGAAAAACCTTTCAGATGTGAAATTTGTTCAAAGTGTTTTATAGAGTCCAGTAAGTTAAAAAAACATATTAGAATTCACACTAACGAGAAACCTTTTAAATGCGAAATTTGTTCAAAATGTTTCAGACAGAACAGTAATTTAAGAAGTCATATTAGAGTTCACTTTGACGAGAAACCTTTTAAATGTGAAATTTGTTCCAAATGTTTCAGAAGATCTAGTTATTTAAAACTGCATATTAGAACTCACACGGGCGAAAAATTATTCACATGTGAAATTTGTTCAAAATATTTTACACGAAAAAGTAAGTTAAAAGAACATAATAGAATTCACACTAACGAGAAACTTTTTAAATGTGAAATTTGTTCCAAATGTTTCACACAATCTAGTTATTTAAAAACTCATGCTAGAATTCACACTAACGAGAAACTTTTTAAATGTGAAATTTGTTCAAAATGCTTTATAGGTTCCAATAATTTAAGAACACATATTAGAATTCACAATAACGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACAGATCAAAGTAATTTAAAAAAGCATATTAGAATTCACACTGATGACAAACCTTTTGAATGTGAAATTTGTTCAAAATGTTTCACAGACCGAAGTAATTTAAAAAACATATTAGAAGTCACACTGGTGAAAAACCTTTCAGTTGTGAAATTTGTTCAAAATCTTTCTCAGAAAAAAGAAATTTAA
- Protein Sequence
- MDVFKDASNPVMSNKIGTDSQYLLSNIKTEEMDILEESKLEFENLHRFDLCKIKTESCEEKVSPTKSNVVLNVDSKEDMQERISDIKIKTENLLSEFNFPVCRNDFGENRQTVETIKMYSKEKCFLSAPKKGQPHIGKFFETCTSCGQFFSDKLLFLNHFYIYHFLVNSKKCVNLRRNNSATKQINLENLSYLNEQIKTNSGQKSFKSEHWSKCLKRNSVLNQLIRIHTGDVKCKMCYKFYTSSRNLKRHINRNIGEKPFTCKFCSKCFIASCALKKHMRIHSNEKLFKCEICTKCFIESRDLKRHIRTHTGEKPFRCEICSKCFIESSKLKKHIRIHTNEKPFKCEICSKCFRQNSNLRSHIRVHFDEKPFKCEICSKCFRRSSYLKLHIRTHTGEKLFTCEICSKYFTRKSKLKEHNRIHTNEKLFKCEICSKCFTQSSYLKTHARIHTNEKLFKCEICSKCFIGSNNLRTHIRIHNNEKPFKCKICSKCFTDQSNLKKHIRIHTDDKPFECEICSKCFTDRSNLKNILEVTLVKNLSVVKFVQNLSQKKEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056812;
- 90% Identity
- iTF_00056812;
- 80% Identity
- iTF_00056914;