Avir014989.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000730:75099-96661[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.9 1.5e+02 2.6 0.0 22 51 234 263 229 266 0.84 2 9 3.9 3.1e+02 1.6 0.0 21 44 261 284 259 289 0.86 3 9 0.037 2.9 8.1 0.1 21 44 289 312 276 316 0.83 4 9 0.028 2.2 8.5 0.3 21 47 317 343 313 349 0.86 5 9 1.1 84 3.4 0.1 21 43 373 395 360 400 0.84 6 9 0.043 3.4 7.9 0.1 21 47 401 427 396 433 0.86 7 9 0.011 0.88 9.7 0.0 21 43 456 478 446 483 0.89 8 9 0.0019 0.15 12.2 0.1 21 52 484 515 479 516 0.87 9 9 0.97 77 3.5 0.1 21 44 512 535 508 538 0.89
Sequence Information
- Coding Sequence
- ATGGATGTTTTCAAAGATGCATCAAATCCATTAATGAATAATAAAATTGAAAGTAATTCTAAAGATTTGTTATCCAATATTAAAACCGAAGAAATTGATATTGAAGAATGTAAACTCGAATTCGAGAACTTGTATGAATTCGATCTTCGTACGATCAAAATGGAAAGTTGTGTAGAAAAAGAAGTTTCTCCAATTAAAACTGATGTTTTGTTAATAAGCAGAAACACTATAAAAACCGAAAATGTTGATTCAAATGAGGGTATTCAAGAAAGAAAAAGGGATATGGAAATGAAGACAGACATTACACACCGCCCATTTAATTTCTCTGTTAGTAGAAATGATATCCATAATTTTGATGAAAATCGACAGACAGTGCAAACAACTAAAATGTATTCTTGGAAAAAACGTTTCCTATCTGCGGCAAAAAAATGGCATCCTCAATTTGGAAAATACTATGGAACCTGTTCCTTTTGTGGACAATTTTTCTGTGATAAATTGCTATTTTTAAACCATTTTTATATTTACCACATTTTAGTTAATTATAAAAAATCTGCTAATTTGAGAACGAGTAGTTCTGCTACAAAACATATTAACCTAAAAGATTTTGGTAATTTAAAAGAACAGATAAGGACTTACTGCGGACAAAATGGTTTTAAACGACAAAAAGACTTAAAACAGCATATTAGAATTCACACTGGCGAAAAGTCATTCAAATGTAAAATTTGTTCAAAATATTTCAAACATTCCTCTGATTTAAAAGTGCATATTAGAATTCACACTGGTGAAAAACCGTTTAAATGTGAAATTTGTTCAAAATGTTTTGTAAGCTCCGGTGTATTAAAAAATCATATGAGGACTCACACTGATGAAAAACCTTACAGATGTGAAATTTGTTCGAAATGTTTCTCACAATCTAAAGGTTTAAAAAGTCATTTTAGAACTCACACTGACGAGAAACCTTTCAAATGTAAAATTTGTTCAAAATGTTTCAAACATTCCTCTCATTTAAACAGGCACATTAAAACTCACACTGGTGAAAAACCTTTTAAGTGTAAAAATTGTTCAAAATGTTTCATAACATCTGGTCGATTAAAAGAGCATATTAGAACTCACACTGGAGAAAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTTAAAATCTCCGCTCATTTAAAAAGTCATAATAGAATACACACTGGTGAAAAACCCTTTAAATGTAACATTTGTTCGAAATGTTTCACACAGTCCAGTCATTTAAAAATGCATATTAAAACTCACAGTGGTGAAAAACCTTTCAGATGTGAAATTTGTTCAAAATGTTTAAGTTGCAGTGATATGAAAACTCATATTAGAACACATACAGGTGAAAAACCTTTCAGATGTAAAATTTGTTTAAAAGCTTTTATACAATCAGAAGATTTAAAAAGGCATAATAGAACTCACACTGACGAAAAGCCTTTTAAATGTAAAATTTGTTCGAAATGTTTCACACAGTCCGGTCATTTAAAAAGGCATATTAGAATTCAGACTGGCGAAAAACCTTTCAGATGTGAAATTTGTTCAAAATGTTTTACCCATGAGGGTAGCTTAAAACGGCATATTAATAGTTGTGACGGTAAAACGTCCTAA
- Protein Sequence
- MDVFKDASNPLMNNKIESNSKDLLSNIKTEEIDIEECKLEFENLYEFDLRTIKMESCVEKEVSPIKTDVLLISRNTIKTENVDSNEGIQERKRDMEMKTDITHRPFNFSVSRNDIHNFDENRQTVQTTKMYSWKKRFLSAAKKWHPQFGKYYGTCSFCGQFFCDKLLFLNHFYIYHILVNYKKSANLRTSSSATKHINLKDFGNLKEQIRTYCGQNGFKRQKDLKQHIRIHTGEKSFKCKICSKYFKHSSDLKVHIRIHTGEKPFKCEICSKCFVSSGVLKNHMRTHTDEKPYRCEICSKCFSQSKGLKSHFRTHTDEKPFKCKICSKCFKHSSHLNRHIKTHTGEKPFKCKNCSKCFITSGRLKEHIRTHTGEKPFKCKICSKCFKISAHLKSHNRIHTGEKPFKCNICSKCFTQSSHLKMHIKTHSGEKPFRCEICSKCLSCSDMKTHIRTHTGEKPFRCKICLKAFIQSEDLKRHNRTHTDEKPFKCKICSKCFTQSGHLKRHIRIQTGEKPFRCEICSKCFTHEGSLKRHINSCDGKTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056939;
- 90% Identity
- iTF_00056939;
- 80% Identity
- iTF_00056939;