Avir005002.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00001887:39481-42332[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0055 0.44 10.7 0.0 18 45 107 135 100 138 0.84 2 4 0.13 10 6.3 0.0 21 45 139 163 135 167 0.91 3 4 0.015 1.2 9.3 0.1 21 47 167 193 163 198 0.86 4 4 0.0011 0.088 12.9 0.0 21 44 195 218 191 220 0.92
Sequence Information
- Coding Sequence
- ATGGATATTTCTGCAATAAAAGAAGAAAAAATCGAAATTATTGGCGAATCAAAACCAGAATTCGACTATTTTAATCAGATGGAAAAAATTGAAGAACATGAGGTGAATCTTGAATTTGAAATTAAAAAAGAAGAATTAGAATCTACAATGGATTTACCGGATTTTAAAATCGAATTTCAAGATTCTGATGAAGAATTAAATTCAGAGCAAGATTCAACAAAACAGGAACCGAATTATGAAAAATGTAAATGTAAATGTTTTAAATGTAAAATTTGTTCGAAACGTTTCACACAATTGAGTCATATAAAAGATCATATTAGATCTCACACTGGAGAAAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACACAATTCGGTAATTTAAAAAGGCATATTAAAACTCACACTGGCGAGAAACCTTTTAAATGTAAATTTTGTTCGAAATGTTTCACACAATCCAATACTTTAAAAAATCATATTAAAACTCACACTAATGAAAAACCTTTTAAATGTAATATTTGTTCGAAATATTTCACACAATCCTGTCATTTAAAAAATCATATTAAAACTCACACTAACGAGAAACCTTTTAAATGTAAAATTTGTTCGAAATATTTTAAACAATCCCGTAGTTTAAAAATGCATATAAAAGATCACTAA
- Protein Sequence
- MDISAIKEEKIEIIGESKPEFDYFNQMEKIEEHEVNLEFEIKKEELESTMDLPDFKIEFQDSDEELNSEQDSTKQEPNYEKCKCKCFKCKICSKRFTQLSHIKDHIRSHTGEKPFKCKLCSKCFTQFGNLKRHIKTHTGEKPFKCKFCSKCFTQSNTLKNHIKTHTNEKPFKCNICSKYFTQSCHLKNHIKTHTNEKPFKCKICSKYFKQSRSLKMHIKDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00057170;
- 90% Identity
- iTF_00057170;
- 80% Identity
- iTF_00057170;