Avir012178.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000526:336687-344930[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.36 28 4.9 0.4 22 44 177 199 172 207 0.85 2 13 1.1 86 3.4 0.0 21 45 204 228 201 235 0.86 3 13 0.4 32 4.7 0.1 21 48 259 286 243 290 0.86 4 13 0.3 23 5.2 0.1 21 44 287 310 283 314 0.90 5 13 0.063 5 7.3 0.1 21 51 315 345 311 347 0.86 6 13 0.36 28 4.9 0.1 21 46 343 368 339 374 0.87 7 13 0.5 40 4.4 0.1 21 48 371 398 367 402 0.86 8 13 0.2 16 5.7 0.1 21 45 399 423 395 430 0.87 9 13 0.064 5 7.3 0.1 21 51 427 457 423 459 0.86 10 13 2.7 2.1e+02 2.1 0.0 21 46 455 480 452 486 0.86 11 13 0.1 8 6.7 0.0 21 44 483 506 478 510 0.91 12 13 0.13 10 6.4 0.2 21 44 511 534 507 538 0.90 13 13 0.54 43 4.3 0.2 19 45 538 564 534 566 0.85
Sequence Information
- Coding Sequence
- ATGGATGATTCTTCAATAAATTCTTCTTTGACTACTAAAAGTGAAATGTTAATTAGAAGTGAAAATGATATTTCAAGTCAAACTAATCATGAGATCAGTCTTAAATTTGACATCAAAAAAGAAGAATTGCACTCTGTTTGTGATTTACTGGATTTTAAAATGGAATTTCCAGATTTTGAGGAAGAATTAAATTCAGAGCGAAGTATCAAAAGATGTTCAAGGAAAGACAATACAAGTTGTCAAAAGCGTTTTCTATTAGCGGCAAAAAAATGGCAACCTCACTTTGGAAAATTCTATGGAACATGCTCATCTTGTGGAAAATTCTTCTATGATAAATTGCTATTTTTAAACCATTTTTATATTTACCACTTTTTCGTTAATTCGAAAAAATCTGTTAACTTAAGAAGAAATAATTCTGGCACAAAGCATATTAACCGACAAGATCTTAGTAATGTAAACAAACCGATAAGGGCGGATAGTTTCACACAACAAAGTGATTTAAAAAAATATATTAAAACCCACAATGGCGAAAAATGTTTTAACTGTAAGATTTGTTCAAAATGTTTCACACAATCCAATATTTTAAATAGGCATATTATAACTCACACTGGCGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATATTTCAGCGATTCCAGTACCTTAAAAACTCATATTAGAACTCATACTGACGAGAAACCTTTTAAATGTAAAATATGTTCGAAATGTTTCACACACTCCGGTGATAAATCTCATATTAAAACTCACACTGGCGAGAAACCTTTTAAATGTAAAATATGTTCGAAATGTTTCACACATTCCAGTAGTTTAAAAGTTCATATTAGAATTCATACTGACGAGAAACCTTTTAAATGTAAAATATGTTCGAAATGTTTTAAACATTCCAATACCTTAAAAACTCATATTAGAACTCATACTGACGAGAAACCTTTTAAATGTCAAATATGTTCGAAATGTTTCACACAATCCAGTGGATTAAAAATTCATATTAGAATTCACACTGGTGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACAGAATCCAGTAAATTAAATAGGCATATTAAAACTCACACTGGCGAGAAACCTTTTAAATGTAAAATATGTTCGAAATGTTTCACACATTCCAGTAGTTTAAAAGTTCATATTAGAATTCATACTGACGAGAAACCTTTTAAATGTAAAATATGTTCGAAATGTTTTAAACATTCCAATACCTTAAAAACTCATATTAGAACTCATACTGACGAGAAACCTTTTAAATGTCAAATATGTTCGAAATGTTTCACACAATCCAGTGGATTAAAAATTCATATTAGAATTCACACTGGTGAGAAACCTTTTAAATGTAAATTATGTTCGAGATGTTTCACAGACTCCAGTCAATTAAAATCTCATATTAAAACTCACACTGGCGAGAAACCTTTTAAATGTAAAATATGTTCGAAATTTTTTACACAATCTAGTAGCTTAAAAAGTCATATTAGAACTCATACTGACGAGAAACCTTTTAAATGTGAAATATGTTCGAAATGCTTCAAACATTCTATTAGTTTAACAAGACATATTAGAACTCATACTGGCGAGAAACAACCTTTTAAATGTATAATTTGTTCAAAATGTTTCACACGACCCAGTAACTTAAAAACTCACATTAAAACACACTGCTGA
- Protein Sequence
- MDDSSINSSLTTKSEMLIRSENDISSQTNHEISLKFDIKKEELHSVCDLLDFKMEFPDFEEELNSERSIKRCSRKDNTSCQKRFLLAAKKWQPHFGKFYGTCSSCGKFFYDKLLFLNHFYIYHFFVNSKKSVNLRRNNSGTKHINRQDLSNVNKPIRADSFTQQSDLKKYIKTHNGEKCFNCKICSKCFTQSNILNRHIITHTGEKPFKCKICSKYFSDSSTLKTHIRTHTDEKPFKCKICSKCFTHSGDKSHIKTHTGEKPFKCKICSKCFTHSSSLKVHIRIHTDEKPFKCKICSKCFKHSNTLKTHIRTHTDEKPFKCQICSKCFTQSSGLKIHIRIHTGEKPFKCKLCSKCFTESSKLNRHIKTHTGEKPFKCKICSKCFTHSSSLKVHIRIHTDEKPFKCKICSKCFKHSNTLKTHIRTHTDEKPFKCQICSKCFTQSSGLKIHIRIHTGEKPFKCKLCSRCFTDSSQLKSHIKTHTGEKPFKCKICSKFFTQSSSLKSHIRTHTDEKPFKCEICSKCFKHSISLTRHIRTHTGEKQPFKCIICSKCFTRPSNLKTHIKTHC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056841;
- 90% Identity
- iTF_00056841;
- 80% Identity
- iTF_00056841;