Avir010917.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000044:137948-143589[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 1.1 89 3.3 0.2 26 52 221 247 215 247 0.83 2 8 0.019 1.5 9.0 0.0 21 47 244 270 241 275 0.87 3 8 0.023 1.9 8.7 0.3 21 44 272 295 269 300 0.90 4 8 0.22 17 5.6 0.2 21 44 300 323 296 327 0.89 5 8 0.0003 0.024 14.8 0.2 21 45 328 352 324 359 0.88 6 8 0.11 8.4 6.6 0.1 21 44 413 436 405 440 0.88 7 8 0.043 3.4 7.9 0.0 21 46 441 466 437 472 0.89 8 8 0.37 30 4.8 0.2 22 45 470 493 466 499 0.87
Sequence Information
- Coding Sequence
- ATGGATGGTAACAAAGAAGCATCAAATCCATCAATGAATAATGAAATCGAAAGTAATCCTAAAGAATTTTTATCTAATATCAAAACCGAAGAAATTGAAACAGAAGAATGTAAACTCAAATTTGAGAAATTTTATGTGATGAAAAGGGAAAGTTGTGTAGAAAACGTTTCTTCAAATAAAAACAATGTTATGTTAATACGCAAAGAACATATAAAAACTGAAAATGTTGATTCAAATGAGGATATTGAAGAAACAAAATGTGATATCGAAATTAAAGCAGATGCTACATTTGATTTCCATGCAAATGTTATCCATGATTTTGTTGAAAATCGACAAACAGGGCAAACAATCAAAATGTCTCCTAGGAAAAAAAGTTTTCTATCTGTGGCAAAAAAATGGCATCATCAATTTGGGAAATTTAATGGAACATGTTCGTATTGTGGACAATTTTTTTGTGATAAATTGTTATTTTTACACCATTTTAGTATTTACCACTTTATAGTTAAATTTAAAAAATATGTTGTTGATTTGAGAATGAATAATTCTGCGACTAAACATATTGGACAAATATCCTTTAAATGCGAAATTTGTTCAAAATACTTCAAAGATCAAAATTATTTAAATCAGCATATTATACTTCACACTGGTGAAAAATTATTCAAATGTGAATATTGTTCGAAATGTTTCACAAAATCTAAGCGTTTAAAAAGGCATGTTAAAATTCACACTAACGAGAAACCTTTTAAATGTGATATTTGTTCAAAACGTTTTCGAATATCAGGTACTTTGAAAAGGCATATTATGATTCACACTGGTGAAAAACCATTCAGATGTGAAATTTGTTCAAAATGTTTCAGACATTCCAGTAATTTAACAACTCATGTTCGAACTCACACTAAAGAGAGACCTTTTAAATGTGAAATTTGTCCAAAATGTTTCATAGATTCCAGTAAATTAAAAAGGCATATTAGAACTCACACTGATGAGAAACCTTTTAAATGTGAAATATGTTCGAAATGTTTCAGACAATCCGGTGATTTAAAAAGGCATATTAGAACTCACACTGCAGATAAATCTTTTAGATGTGAATATTGTTCAAAGTGTTTCAAAGAAAATGGACGCTTAAAACAGCATATTATTAGATATCATACTGGTGAAAAGTCATTCAAATGTGAAATTTGTCTAAAATGTTTCACACTACAAAATGATATAAAACTACATAATAGAACTCACACTGCAGATCAACCTTTTAAATGTAAAGTTTGTTCGAAATGTTTTCACAGTTCCACTAATTTAAAAATTCATGTTAGAACTCACACTGGTGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACAAAATCTAGTAATTTAAAATTGCATGTTAAAATTCACACTGGCGAGAAAGCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACACAAGCTAGTTCTTTAAAAAGGCATATTAGAACTCACACTGGTGAAAAATCTTACAGATGTGAGCTTTGTTCAAAATGTTTCTCGCGAAAAACTCACTTACAAAATCATATCGTAAAAAGGCACATTGGTGAAAAAATATTTCAAATGTGA
- Protein Sequence
- MDGNKEASNPSMNNEIESNPKEFLSNIKTEEIETEECKLKFEKFYVMKRESCVENVSSNKNNVMLIRKEHIKTENVDSNEDIEETKCDIEIKADATFDFHANVIHDFVENRQTGQTIKMSPRKKSFLSVAKKWHHQFGKFNGTCSYCGQFFCDKLLFLHHFSIYHFIVKFKKYVVDLRMNNSATKHIGQISFKCEICSKYFKDQNYLNQHIILHTGEKLFKCEYCSKCFTKSKRLKRHVKIHTNEKPFKCDICSKRFRISGTLKRHIMIHTGEKPFRCEICSKCFRHSSNLTTHVRTHTKERPFKCEICPKCFIDSSKLKRHIRTHTDEKPFKCEICSKCFRQSGDLKRHIRTHTADKSFRCEYCSKCFKENGRLKQHIIRYHTGEKSFKCEICLKCFTLQNDIKLHNRTHTADQPFKCKVCSKCFHSSTNLKIHVRTHTGEKPFKCEICSKCFTKSSNLKLHVKIHTGEKAFKCEICSKCFTQASSLKRHIRTHTGEKSYRCELCSKCFSRKTHLQNHIVKRHIGEKIFQM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056898;
- 90% Identity
- iTF_00056898;
- 80% Identity
- iTF_00056898;