Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00001785:38047-40855[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 8.8 7e+02 0.4 0.1 22 44 91 113 80 117 0.80

2 10 0.63 50 4.1 0.0 21 44 118 141 109 145 0.88

3 10 0.035 2.8 8.1 0.0 21 45 146 170 141 178 0.86

4 10 6.3 5e+02 0.9 0.0 21 47 174 200 170 207 0.81

5 10 1.8 1.4e+02 2.6 0.1 21 44 202 225 189 229 0.85

6 10 0.0067 0.53 10.4 0.2 15 44 223 253 216 257 0.82

7 10 0.0038 0.3 11.2 0.1 21 52 258 289 254 290 0.86

8 10 1.3 99 3.2 0.1 22 45 287 310 282 316 0.87

9 10 0.28 22 5.3 0.1 20 44 341 365 332 369 0.85

10 10 0.13 10 6.4 0.1 21 45 370 394 366 400 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	8.8	7e+02	0.4	0.1	22	44	91	113	80	117	0.80
2	10	0.63	50	4.1	0.0	21	44	118	141	109	145	0.88
3	10	0.035	2.8	8.1	0.0	21	45	146	170	141	178	0.86
4	10	6.3	5e+02	0.9	0.0	21	47	174	200	170	207	0.81
5	10	1.8	1.4e+02	2.6	0.1	21	44	202	225	189	229	0.85
6	10	0.0067	0.53	10.4	0.2	15	44	223	253	216	257	0.82
7	10	0.0038	0.3	11.2	0.1	21	52	258	289	254	290	0.86
8	10	1.3	99	3.2	0.1	22	45	287	310	282	316	0.87
9	10	0.28	22	5.3	0.1	20	44	341	365	332	369	0.85
10	10	0.13	10	6.4	0.1	21	45	370	394	366	400	0.88

Sequence Information

Coding Sequence: GAGAAAAATAAGAAAGGCAATATGGATATTTGTGCAATAAAAGAAGAAAAAATCGAAATTATTGACGAATCAAAACCAGAATTCGACAATTTTAATCAGATGGAAAAAATTGAAGAACATGAGGTGAATCTTGAATTTGAAATTAAAAAAGAAGAATTAGAATCTACAATAGATTTACCGGATTTTAAAATCGAATTTCAAGATTCTGATGAAGAATTAAATTCAGAGCGAGATTCAACAAAACAGGAACCGAGTTATAAAAATATTACCGATAAATCTTTTAAATGTAAAATTTGTTCGAAATGTTTCACAAGATCCAGTCATTTAAAAGATCATATTAGAACTCACACTGGAGAAAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACACAATCAGGTATTTTAAAAAATCATATTAAAAGTCACACAGGAGAAAAACCTTTTAAATGTAAATTATGTTCGAAATCTTTCACACAATCCGGTAATTTAAAATATCATATTAAAAGTCACACTGGAGAAAAACCTTTTAAATGTAAATTTTGTTCGAAATTTTTCACAGCATTCGGTAGTTTAAAAAGGCATATTAGAACTCACACTAACGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACAGAATCCGGTAAATTAAAAAATCACATTAGAAGTCACACTAATGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACACAATCCAGTAATTTAAAATGTCATATTAGAACTCACACTGGAGAAAAACCTTTTAATTGTAAATTATGTTCGAAATGTTTCACACAATCCAATAATTTAAAAAATCATATGAAAACTCACACTAACCAAAAACCATTTAAATGTAAATTATGTTCGAAATGTTTCACAGCATCCGGTAGTTTAAAAAGGCATATTAGAACTCACGCTAACGAGAAATCTTTTAAATGTGAAAATTGTTCAAAATGTTTCACACTTTTTGAATCATTAAAAAAGCATAATAGAACTCACACTGGCGAGAGACCTTTTAAATGTAAAATATGTTCGAAATCTTTCACACAATCCATTATTTTAAAATCTCATATTAGCACTCACACTGGAGAAAAACCTTTTAAATGTAAATTATGTTCGAATTGTTTCACAAAATCCAGTAATTTAAAATGTCATATTAGAACTCACACTAACGAAAAAACCTTTTAA
Protein Sequence: EKNKKGNMDICAIKEEKIEIIDESKPEFDNFNQMEKIEEHEVNLEFEIKKEELESTIDLPDFKIEFQDSDEELNSERDSTKQEPSYKNITDKSFKCKICSKCFTRSSHLKDHIRTHTGEKPFKCKLCSKCFTQSGILKNHIKSHTGEKPFKCKLCSKSFTQSGNLKYHIKSHTGEKPFKCKFCSKFFTAFGSLKRHIRTHTNEKPFKCKLCSKCFTESGKLKNHIRSHTNEKPFKCKLCSKCFTQSSNLKCHIRTHTGEKPFNCKLCSKCFTQSNNLKNHMKTHTNQKPFKCKLCSKCFTASGSLKRHIRTHANEKSFKCENCSKCFTLFESLKKHNRTHTGERPFKCKICSKSFTQSIILKSHISTHTGEKPFKCKLCSNCFTKSSNLKCHIRTHTNEKTF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00056936;
90% Identity: iTF_00056936;
80% Identity: iTF_00056984;