Avir010643.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000423:360371-364198[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0056 0.44 10.7 0.0 26 47 97 118 85 123 0.83 2 8 0.46 37 4.5 0.0 21 46 120 145 116 152 0.85 3 8 0.00063 0.05 13.7 0.1 21 46 204 229 193 234 0.90 4 8 3.3 2.6e+02 1.8 0.1 22 44 233 255 229 260 0.81 5 8 0.0042 0.34 11.1 0.1 21 45 260 284 256 291 0.90 6 8 8.9 7.1e+02 0.4 0.0 21 46 288 313 284 319 0.84 7 8 1.4 1.1e+02 3.0 0.1 21 48 316 343 312 347 0.84 8 8 0.037 2.9 8.0 0.1 21 45 344 368 340 371 0.91
Sequence Information
- Coding Sequence
- ATGGGACATGTTTATTTTGTGGAAAAAATTTTCTATCACAAATTACTGTTTTTAAACCATTTTTATATTTATCACTTTTTAGTAAATACTGAAAAATTTGTTAATTGTAGGAGGAGTAAATCTGTTCAAAAACACTCTAAACTAAAAGATCTTCAATACGAGATTTGTTCTAAATTATTTCAATGTAATACGAAAATGAGAAAACTGTTAAAAACAAGAAGTTCTACACAAAAAACTAAATTAAAACTTGAAGAACATAATAAGACTCATAGTGGAAAAAAATCATTTAGGTGTGAAATTTGTTTTAAATTTTACACCACATCTTATAATCTAAAAAGACATCTTCAAACTCACACTGGTGAAAAACCTTTTAAATGTAAAATTTGTTCTAAATGTTTTACAGATTCAAAAACTTTTAAAACGCATATTAAAACTCACACTGACGAAAAGCCTTTTGATTGTGAAACTTGTTTTGAACGTTTTTCTGAATTCAGTGATTTAAAAAACCATATTAAAAGTCACAATCCTAAAAATCCTTTCAAATGTGAAATATGTTCAAAATGTTTCACGGTACGAAGTACTTTAAATAAACATATTAAAATTCACAGTGGCGAAAAACCTTTTAAATGTACAATTTGTTTAAAATGTTTCACACAATCGAATTCTTTAAAACGACATATTAAAATTCACACTGGTGAGAAATCTTTCAAATGTGAAATTTGTTCAAAATGTTTCACTGTACAAAGTAACTTAAAAAAACACATTAGAACTCACACCGGTGAAAAACCCTTTACTTGTGATATTTGTTCAAAATGTTTCACACAATCCAGTTCTTTAAAAGCGCATATTAGAACTCACACTGGTGAAAATCCATTCAAATGTGAATTTTGTTCAAAATCTTTCACAATACAAAGTAATTTAAAATCGCATATAAGAATTCACACTGGTGAAAATCCATTTAAATGTGAATATTGTTCAAAATGTTTCACAATGCAAAGTAACTTAAAAAAGCATATTCGAATTCACACTGGGGAAAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTTACACAGTCAAATTCTTTAAAAACGCATATTAAAACTCATACTAATGATGATAGTTTAAGATGTGAAATTGTCCAAAATGTTTCACAGTACTAA
- Protein Sequence
- MGHVYFVEKIFYHKLLFLNHFYIYHFLVNTEKFVNCRRSKSVQKHSKLKDLQYEICSKLFQCNTKMRKLLKTRSSTQKTKLKLEEHNKTHSGKKSFRCEICFKFYTTSYNLKRHLQTHTGEKPFKCKICSKCFTDSKTFKTHIKTHTDEKPFDCETCFERFSEFSDLKNHIKSHNPKNPFKCEICSKCFTVRSTLNKHIKIHSGEKPFKCTICLKCFTQSNSLKRHIKIHTGEKSFKCEICSKCFTVQSNLKKHIRTHTGEKPFTCDICSKCFTQSSSLKAHIRTHTGENPFKCEFCSKSFTIQSNLKSHIRIHTGENPFKCEYCSKCFTMQSNLKKHIRIHTGEKPFKCKICSKCFTQSNSLKTHIKTHTNDDSLRCEIVQNVSQY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056951;
- 90% Identity
- iTF_00056951;
- 80% Identity
- iTF_00056951;