Avir014006.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000659:267632-271781[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.2 92 3.3 0.1 18 52 101 136 97 137 0.83 2 9 0.00096 0.076 13.1 0.0 22 46 134 158 130 165 0.87 3 9 0.31 25 5.1 0.1 20 50 160 190 156 194 0.85 4 9 4.6 3.6e+02 1.3 0.1 27 44 196 213 192 217 0.90 5 9 2.5 2e+02 2.2 0.3 26 52 223 249 214 249 0.78 6 9 0.0049 0.38 10.9 0.1 21 51 246 276 241 278 0.87 7 9 5.6 4.4e+02 1.1 0.1 21 44 274 297 270 301 0.79 8 9 0.0012 0.092 12.9 0.0 21 44 302 325 291 329 0.89 9 9 0.44 35 4.6 0.0 21 46 330 355 326 360 0.87
Sequence Information
- Coding Sequence
- ATGATTGATTTTTTACTATATTTTCTTTTATTACTGCTATTTATTTGCATCATTATTACCATTGATATGAACTTATATATTTCAGGTTTCCTATCTGCACAAAAAAACTGGCAAGGTCACTTTGGAAAATTGTATGGAATATGTTCCTTTTGTGGACAGTTTTTCTGTGATAAATTACTATTTTTATACCATTTCTATATTTACCACTTTTTAGTTAATTCTAAAAAATCTGTTAACTTGAGGAGTAATTCTACTACAAAACACATTAACCCAAATCTTTGTGATTTAAACAAACAGATGAGGACTCACAATGAACAAAAATCCTTTAAATGCAAAATTTGTTCAAAATGTTTCACACGATCCGGTCTTTTAAAAAATCATATTAGAATTCACACTCACGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATCTTTTATACAATCCGGTAATTTAAAAAGGCATATAAGTACTCACACTGGTGAAAAACCTTTCAGATGTGAAATTTGTTTAAAATGTTTCACACAAAAAGGTAGCTTAAAAGAGCATACTATTAGAACTCACATCGGTAAAAAGTTATTCAAATGTGAAATTTGTTTAAAATGTTTCACACAACAAAGTGATTTAAAACAACATATTAGAACTCACACTGGTGAAAATCTTTTTAGATGTGAAATTTGTTCAAAATGTTTTGTACGACAAAAGGATTTAAAAAAGCATATTAGAATTCACACTGCCGAAAAACCTTTTATGTGTGACATTTGTTCAAAATGTTTTAGATTCTCCGCTGATTTAAAAAAGCACATTAGAATTCACACTGGCGAGAAACCTTTTAAATGTGAAATTTGTTTAAAATGTTTTACACGATTCGGTGGTTTAAAAAATCATATTAGAATTCACACTGACGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATCTTTTATACAATCCGGTAATTTAAAGAGGCATATTAGAACGCACACTGGTGAAAAACCTTTCAGATGTGAAATTTGTTCAAAATGTTTCACAGAAAAAGGTAACTTAAAAGAGCATATTACTAATATTCACGGTGAAAAGCTATTGAAATGTAAAAATTGTTCAATATATTTCACACGAAAACGTGGCTTAAAAGACCCATTCAAATGTGAAAATTGCTCAAAATGTTTCCCACAACAAGCGATTTAA
- Protein Sequence
- MIDFLLYFLLLLLFICIIITIDMNLYISGFLSAQKNWQGHFGKLYGICSFCGQFFCDKLLFLYHFYIYHFLVNSKKSVNLRSNSTTKHINPNLCDLNKQMRTHNEQKSFKCKICSKCFTRSGLLKNHIRIHTHEKPFKCEICSKSFIQSGNLKRHISTHTGEKPFRCEICLKCFTQKGSLKEHTIRTHIGKKLFKCEICLKCFTQQSDLKQHIRTHTGENLFRCEICSKCFVRQKDLKKHIRIHTAEKPFMCDICSKCFRFSADLKKHIRIHTGEKPFKCEICLKCFTRFGGLKNHIRIHTDEKPFKCEICSKSFIQSGNLKRHIRTHTGEKPFRCEICSKCFTEKGNLKEHITNIHGEKLLKCKNCSIYFTRKRGLKDPFKCENCSKCFPQQAI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056930;
- 90% Identity
- iTF_00056930;
- 80% Identity
- iTF_00056930;