Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00000075:134831-147251[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.066 5.2 7.3 0.1 21 45 296 320 283 327 0.83

2 14 0.081 6.4 7.0 0.1 23 45 326 348 320 357 0.86

3 14 0.1 7.9 6.7 0.6 22 46 353 377 348 382 0.86

4 14 1.7 1.3e+02 2.8 0.0 22 44 381 403 378 407 0.86

5 14 0.11 8.8 6.5 0.2 21 46 408 433 404 439 0.86

6 14 2.2 1.7e+02 2.4 0.2 21 44 436 459 432 464 0.88

7 14 0.14 11 6.2 0.0 21 44 464 487 456 494 0.89

8 14 0.66 52 4.0 0.1 22 46 493 517 488 524 0.83

9 14 1.7 1.3e+02 2.7 0.0 21 44 520 543 516 547 0.89

10 14 0.0028 0.22 11.7 0.2 21 47 548 574 540 580 0.84

11 14 0.096 7.6 6.7 0.1 23 45 578 600 572 608 0.87

12 14 0.12 9.2 6.5 0.6 22 46 605 629 600 632 0.86

13 14 0.94 74 3.6 0.0 22 46 633 657 628 664 0.83

14 14 5.9 4.7e+02 1.0 0.2 21 46 660 685 656 692 0.79

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.066	5.2	7.3	0.1	21	45	296	320	283	327	0.83
2	14	0.081	6.4	7.0	0.1	23	45	326	348	320	357	0.86
3	14	0.1	7.9	6.7	0.6	22	46	353	377	348	382	0.86
4	14	1.7	1.3e+02	2.8	0.0	22	44	381	403	378	407	0.86
5	14	0.11	8.8	6.5	0.2	21	46	408	433	404	439	0.86
6	14	2.2	1.7e+02	2.4	0.2	21	44	436	459	432	464	0.88
7	14	0.14	11	6.2	0.0	21	44	464	487	456	494	0.89
8	14	0.66	52	4.0	0.1	22	46	493	517	488	524	0.83
9	14	1.7	1.3e+02	2.7	0.0	21	44	520	543	516	547	0.89
10	14	0.0028	0.22	11.7	0.2	21	47	548	574	540	580	0.84
11	14	0.096	7.6	6.7	0.1	23	45	578	600	572	608	0.87
12	14	0.12	9.2	6.5	0.6	22	46	605	629	600	632	0.86
13	14	0.94	74	3.6	0.0	22	46	633	657	628	664	0.83
14	14	5.9	4.7e+02	1.0	0.2	21	46	660	685	656	692	0.79

Sequence Information

Coding Sequence: ATGGATGTTTTTAAAGGAAAAGTTAAAATAGAGTTTTATGATCAATTCCAAGTCGAAAATCAGAACTGTATTGAAACTGATATGGATCTTGGTTTTAATGTTAAGGAAGAACTCTTAGACCCAGTTGGTGATTTGTCCGAAGTGAAAAATAACTCCGATAATGACTTAGATTTAAAAGAAAGATCGTTTTATTCTGAAGTTCAAGAACAGCCCTACAATAGTAGTATGTTTAAGAAAGAACCAAAATTCGAATACGAAGACTCTCAACAATTCGTAACTATGGATAATTCTTCATTACATTCTTTCATTACTAAGACTGAAATGTTAATTAGCAATGAAAATAATATTTCAAGTCAAACTAATCAAGAGATGAATTTTGAATGTAACATTAAAAAAGAAGAATTACATTCTATTTGCGATTTACCGGATTTTAAAATGGAATTTCAAAATTTTGATAAAGAATTACATTCAGAGCGACGCATCAAAAGATATTCCAGGAAACAGAGTCCAAGTTGTAAAAAAGGTTTTCTATCAGCGGCAAAAAAATGGCAACCTCACTTTGGAAAATTCTATGGAACATGCTCATCTTGTGGAAAATTCTTTTATGATAAATTGCTATTTTTAAACCATTTTTATATGTACCACTTTTTCGTTAATTCGAAAAAATCTGTTAACTTAAGAAGGAATAATTCTGCCACAAATCTTATTAACCGACAAGAACTTAGTAATTTAAACAAACAGATAGGGGCGGACAATTTCACACAACAAAGTAATTTTGAAAAATATATTAAAACCCACATTGCCGAAAAACATTTTAAATGTAAAATTTGTTCGAAAGGTTTCACACGACCCAGTCACTTAAAAACTCATATTAGAACTCATACTGACGAGAAACCTTTTAAATGTGAAATATGTTCGAAATGCTTCAAATATTCTAGTAATTTAAATAGCCATATTAGAACTCACACTGGTCGGAAACCTTTTAAATGTAAAATTTGTTCAAAATATTTCACAGAATCCAGTAATTTAAATAGGCATATTAGAACTCACACGGACGAGAAACATTTTAAATGTAAAATATGTTCAAAATGTTTCAGACAATCCAGTCATTTAAAAAGTCATATTAGAATTCACACGGACGAAAAAACTTTTAAATGTAACATTTGTTCGAAATTTTTCACACAATCCAGTCACTTAAAAACTCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCACACGATCCGATCATTTAAATAGGCATATTAAAACTCACACTGGTGAGAAACCTTTTAAATGTGAAATATGTTCGAAATGTTTCAATCGTTCCAGTTGCTTAAAAGTTCATATTAGAACTCATACTGACGAGAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCACACAATCCGGTACCTTAAAAACTCATATTAGTACTCATACTGACGAGAAATCTTTTAAATGTGAAATATGTTCGAAATGCTTCAAATATTCTATTAGTTTAAAAAGACATATTACAACTCACACTGACGAGAAACCTTATAAATGTAAAATCTGTTCGAAATGTTTCACAGATTCCAGTGGATTAAAAAGTCATATAAGAACTCATACTGACGAGAAACCTTTTAAATGTGAAATATGTTCGAAATGCTTCAAACATTCTAGTAATTTAAATAGGCATATTAGAACTCACACTGATGGGAAACCTTTTAAATGTAAAATTTGTTCAAAATATTTCACAGAATCCAGTAATTTAAATAGGCATATTAGAACTCACACGGACGAGAAACATTTTAAATGTAAAATATGTTCAAAATGTTTCAGACAATCCAGTCATTTAAAAAGTCATATTAGAATTCACACGGACGAAAAAACTTTTAAATGTAACATTTGTTCGAAATTTTTCACACAATCCAGTCACTTAAAAACTCATATTAGAACTCACACTGGCGAGAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCACACGACCCAGTCACTTAAAAACTCATATTAGAACTCATACTAACGAGAAACCTTTTAAATGTGAAATATGTTCGAAATGTTTCAATCGTTCCAGTTGCTTAATAGAACTCATACTGACGAGAAACCTTTTAAATGTGAAATATGTTCGAAATGCTTCAAACATTCTATTAGTTTAA
Protein Sequence: MDVFKGKVKIEFYDQFQVENQNCIETDMDLGFNVKEELLDPVGDLSEVKNNSDNDLDLKERSFYSEVQEQPYNSSMFKKEPKFEYEDSQQFVTMDNSSLHSFITKTEMLISNENNISSQTNQEMNFECNIKKEELHSICDLPDFKMEFQNFDKELHSERRIKRYSRKQSPSCKKGFLSAAKKWQPHFGKFYGTCSSCGKFFYDKLLFLNHFYMYHFFVNSKKSVNLRRNNSATNLINRQELSNLNKQIGADNFTQQSNFEKYIKTHIAEKHFKCKICSKGFTRPSHLKTHIRTHTDEKPFKCEICSKCFKYSSNLNSHIRTHTGRKPFKCKICSKYFTESSNLNRHIRTHTDEKHFKCKICSKCFRQSSHLKSHIRIHTDEKTFKCNICSKFFTQSSHLKTHIRTHTDEKPFKCKICSKCFTRSDHLNRHIKTHTGEKPFKCEICSKCFNRSSCLKVHIRTHTDEKPFKCKICSKCFTQSGTLKTHISTHTDEKSFKCEICSKCFKYSISLKRHITTHTDEKPYKCKICSKCFTDSSGLKSHIRTHTDEKPFKCEICSKCFKHSSNLNRHIRTHTDGKPFKCKICSKYFTESSNLNRHIRTHTDEKHFKCKICSKCFRQSSHLKSHIRIHTDEKTFKCNICSKFFTQSSHLKTHIRTHTGEKPFKCKICSKCFTRPSHLKTHIRTHTNEKPFKCEICSKCFNRSSCLIELILTRNLLNVKYVRNASNILLV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00056800;
90% Identity: iTF_00056800;
80% Identity: iTF_00056800;