Avir002123.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000127:1039193-1042654[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.1 87 3.3 0.1 22 45 252 275 247 283 0.87 2 10 0.15 11 6.2 0.5 27 46 285 304 279 307 0.91 3 10 0.42 33 4.7 0.1 21 44 321 344 318 349 0.89 4 10 0.0089 0.7 10.0 0.1 21 51 349 379 345 380 0.87 5 10 0.0046 0.36 11.0 0.0 21 48 377 404 375 408 0.87 6 10 0.047 3.7 7.7 0.0 21 46 405 430 403 435 0.89 7 10 0.12 9.8 6.4 0.1 26 46 464 484 458 490 0.85 8 10 3.7 2.9e+02 1.7 0.3 21 44 487 510 483 514 0.87 9 10 0.087 6.9 6.9 0.1 21 46 515 540 511 546 0.87 10 10 0.15 11 6.2 0.1 21 45 543 567 539 570 0.91
Sequence Information
- Coding Sequence
- ATGAATAATAAAGTTGAAAGTAATTCTAAAGATTTGTTATCCAATATTAAATCCGAAGAAATTGATATTGAAGAATGTAAACTCGAATTCGAGAACTTGTATGAATTCGACCTTTGTAAGGTCAAAACTGAAAGTTGTGTAGAAAAAGAAGTTTCTTCAACTAAAACTGATGTTGTGTTAATAAGCAGAGAAACTATAAAAACCGAAAATGTTGATTCAAATGAGGGTATTCAAGAAAGAAAAAGTGATATGGAAATTAAGACAGACATTACACACCGTCCATTTAATTTCTCTGTTAGTAGAAATGATATCCATAATTTTGATGAAAATCGGCAGACAGTGCAAACAATTAAAATGTATTCTTGGAAAAAACGTTTCCTATCTGCGGCAAAAAAATGGCATCCTCAATTTGGAAAATACTGTGGAAGCTGTTCCTTTTGTGGACAATTTTTCTGTGATAAATTGCTATTTTTAAACCATTTTTATATTTACCACATTTTAGTTAATTGTAAAAAATCTGTTAATTTGAGAACGAGTAATTATGCTACAAAACGTATTAACCTAAAAGATTTTGGTAATTTAAAAGAACAGATGAGGACTTACAGTGGACAAAACAGTTTTAAACGACAAAAAGACTTAAAACAGCATATTAAAATTCAAACTGGTAAAACACCTTTCAGATGTAAAATTTGTTCAAAATGTTTCACACGAAAAGGTAGCTTAAAAGATCATATTATTCGAATTCACACTGGTGAAAAGTCATTCAAATGTGAAATTTGTTTAAAATGTTTCACACAAAGCGGACATTTAAAATATCATATTAAAACTCACACAGGTAAAAAACTTTTCAGATGTGAAATTTGTACAAAGTGTTTTAGAAGTTCCAGTCATTTAAAAAGGCATATTAAAATTCACACTAAGGAATCTGATAAGTTAAATAACCATATTAAAATTGACACTGGTGAAAAACCTTTCAGATGTCAAATTTGTTCAAAAAGTTTTATACATTCCAGTAACTTAAAAGTTCATATTAGAAATCACACTGCTGAAAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTTAAAACATCCAGCCATTTAAAAAGGCATGTTGGAATTCACACTAACGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACAGGCTCTGGTAATTTAAAAAGGCATATTAAAGTTCACACTGGCGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTTATGGACTCCACTAATTTAAAAACACATATTAGAATTCATAATAAACCATTTGAATGTAAAATTTGTTTAAAATGTTTCACAGACCAAAGTTATTTAAAACAGCATATTAGAATTCACACTGACGACAAACGTTTTAATTGTGAAATTTGTTTAAAACGTTTCACACAATCCAGTGATTTAAAAAGGCATATTAGAACTCACACAGGTGAAAAACCTTTCAGATGTGAAATTTGTTCGAAATGTTTCATAGATTGCAGTAATTTAAATAGCCATATTATAACTCACACTGGTGAAAAACCGTTTAGATGTCGAATTTGTTCAAAAAGTTTTATACAATCCAGTCATTTAAAAAAACATATTAGAACTCACACAGGTGAAAAACCTTTCAGATGTGAAATTTGTTCAAAATGTTTCACACAAAAGGGTGGCTTAAAACGGCATATTAATAGTTGTCCTAAATTGCGTTATGCCCTTAGCTAG
- Protein Sequence
- MNNKVESNSKDLLSNIKSEEIDIEECKLEFENLYEFDLCKVKTESCVEKEVSSTKTDVVLISRETIKTENVDSNEGIQERKSDMEIKTDITHRPFNFSVSRNDIHNFDENRQTVQTIKMYSWKKRFLSAAKKWHPQFGKYCGSCSFCGQFFCDKLLFLNHFYIYHILVNCKKSVNLRTSNYATKRINLKDFGNLKEQMRTYSGQNSFKRQKDLKQHIKIQTGKTPFRCKICSKCFTRKGSLKDHIIRIHTGEKSFKCEICLKCFTQSGHLKYHIKTHTGKKLFRCEICTKCFRSSSHLKRHIKIHTKESDKLNNHIKIDTGEKPFRCQICSKSFIHSSNLKVHIRNHTAEKPFKCKICSKCFKTSSHLKRHVGIHTNEKPFKCKICSKCFTGSGNLKRHIKVHTGEKPFKCEICSKCFMDSTNLKTHIRIHNKPFECKICLKCFTDQSYLKQHIRIHTDDKRFNCEICLKRFTQSSDLKRHIRTHTGEKPFRCEICSKCFIDCSNLNSHIITHTGEKPFRCRICSKSFIQSSHLKKHIRTHTGEKPFRCEICSKCFTQKGGLKRHINSCPKLRYALS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056851;
- 90% Identity
- iTF_00056851;
- 80% Identity
- iTF_00056851;