Avir009296.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000035:1880723-1885365[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.23 18 5.5 0.1 27 51 192 216 187 219 0.86 2 9 0.0046 0.37 10.9 0.1 23 46 216 239 212 245 0.85 3 9 0.0047 0.38 10.9 0.3 22 44 243 265 238 269 0.89 4 9 0.99 79 3.5 0.1 22 52 271 301 266 302 0.85 5 9 0.54 42 4.3 0.1 21 46 298 323 294 329 0.78 6 9 0.058 4.6 7.4 0.0 21 48 326 353 322 357 0.87 7 9 0.011 0.86 9.8 0.1 21 45 354 378 350 386 0.91 8 9 0.73 57 3.9 0.0 21 45 410 434 402 442 0.88 9 9 5 4e+02 1.2 0.1 25 43 442 460 434 468 0.86
Sequence Information
- Coding Sequence
- ATGGATGGTTTTCAAAGAAGAATCAGATCATTAATGAATAATAAAATCGAATGTAGTCCTAACGAACTATTATCTAATATTAAAACCGAAGAAATTGACATTGAAGAATGTAAACTCGAATTCGATAACTTCCATGAAATTGACTATTATATGATGAAAAGGGAAAGTTCTGAAGAAACTAAAAGTGATGTTTTAATAAGCACAGAAAATATAAAAACTGAAAATGGTAATTCAAATGAGGGTATTCAAGAAAGAAAAAGTGATATTGAAATTAAGAAATATGATTTCCCTGTTTGTACAAAAGCTATCCATGATTTTGTTGAAGTAGGACAAACTGTGCAAACAATCAAAATGCATTCTAGGAAAAAATGTTTTCTGTCTGTGCCGAAAAAGTGGCAACCTCACTTTGGGAAATTTTATGGAACATGTTTCTCTTGTGGACAATTTTTCTGTGATAAATTGCTATTTTTAAACCATTTTTATATATACCACTTTTTAGTTAATTCCAAAAAATCTGTTAACTTAAGAAAAAATAATTCTGATAAAAAACATATTGGACAAATGTTCTTTAAATGCGAAATTTGTACAAAATGTTTTACACAATCCAGTGATTTAAAACAACATATTAGAATTCACACTGACAAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACACAATCAGGTAATTTAAATAGGCATGTTAGAACTCACACTGACAAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACACAATCAAGTAATTTAAATAGGCATGTTAGAACTCACACTGACGAAAAATCTTTTCAATGTGAAATTTGTTCAAAATGTTTTAAACGATCTGATTATTTAAAAACGCATGTTAAAATTCACAGTAACGAGAAACCTTTTAAATGTAAAGTTTGTTCAAAATGTTTCACACGACAAAGTGATTTAAATCGACATGTTAAAACTCATACCGGTGAAAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACAGATTCCAGTGATTTAAAAAAGCATATTAGAATTCACACTGGTGAAAAACCTTTTAAATGTGAAATTTGTTTAAAATGTTTCACACAATCGAGTGATTTAAAAAAGCATATTAGAACTCACACTGGTGAAAAACGTTTTAAATGTAAAATTGGTTCAAAATGTTTGACAAACCAAAGTAATTTAAAAAAGCATATTAGAATTCACACTGGTGAAAAACCTTTTAAATGTAAAATTTGTCCGAAAGGTTTTAAAAGTGCCAGTCCTTTAAAAAGGCATATCAGAACTCACACTGCAGATAAATCTTTTAAATGTAAAGTTTGTACGAAATGTTTTAAAAATTCCAGTAATTTAAAAATTCATGGTATAACTCACATTGGTGAGAAACCTTTTAAATGA
- Protein Sequence
- MDGFQRRIRSLMNNKIECSPNELLSNIKTEEIDIEECKLEFDNFHEIDYYMMKRESSEETKSDVLISTENIKTENGNSNEGIQERKSDIEIKKYDFPVCTKAIHDFVEVGQTVQTIKMHSRKKCFLSVPKKWQPHFGKFYGTCFSCGQFFCDKLLFLNHFYIYHFLVNSKKSVNLRKNNSDKKHIGQMFFKCEICTKCFTQSSDLKQHIRIHTDKKPFKCEICSKCFTQSGNLNRHVRTHTDKKPFKCEICSKCFTQSSNLNRHVRTHTDEKSFQCEICSKCFKRSDYLKTHVKIHSNEKPFKCKVCSKCFTRQSDLNRHVKTHTGEKPFKCEICSKCFTDSSDLKKHIRIHTGEKPFKCEICLKCFTQSSDLKKHIRTHTGEKRFKCKIGSKCLTNQSNLKKHIRIHTGEKPFKCKICPKGFKSASPLKRHIRTHTADKSFKCKVCTKCFKNSSNLKIHGITHIGEKPFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056893;
- 90% Identity
- iTF_00056893;
- 80% Identity
- iTF_00056893;